Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2555742..2556010 | Replicon | chromosome |
| Accession | NZ_CP028761 | ||
| Organism | Escherichia coli strain A13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2555780..2555882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2555742..2556010 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY66_RS12375 | 2552899..2554338 | + | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY66_RS12380 | 2554456..2554692 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY66_RS12385 | 2554797..2554988 | + | 192 | WP_053887672.1 | YebW family protein | - |
| AOY66_RS12390 | 2554989..2555645 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2555742..2556010 | + | 269 | - | - | Antitoxin |
| - | 2555780..2555882 | - | 103 | - | - | Toxin |
| AOY66_RS12395 | 2556040..2556381 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AOY66_RS12400 | 2556394..2557266 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY66_RS12405 | 2557270..2557644 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY66_RS12410 | 2557783..2558013 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY66_RS12415 | 2558115..2558771 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY66_RS12420 | 2558794..2559456 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103822 NZ_CP028761:c2555882-2555780 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103822 NZ_CP028761:2555742-2556010 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
