Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060515..2060783 | Replicon | chromosome |
| Accession | NZ_CP028753 | ||
| Organism | Escherichia coli strain A22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060643..2060745 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060515..2060783 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY75_RS09690 | 2057069..2057731 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY75_RS09695 | 2057754..2058410 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY75_RS09700 | 2058512..2058742 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY75_RS09705 | 2058881..2059255 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY75_RS09710 | 2059259..2060131 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY75_RS09715 | 2060144..2060485 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2060515..2060783 | - | 269 | - | - | Antitoxin |
| - | 2060643..2060745 | + | 103 | - | - | Toxin |
| AOY75_RS09720 | 2060880..2061536 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| AOY75_RS09725 | 2061537..2061728 | - | 192 | WP_001317886.1 | YebW family protein | - |
| AOY75_RS09730 | 2061833..2062069 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY75_RS09735 | 2062187..2063626 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103607 NZ_CP028753:2060643-2060745 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103607 NZ_CP028753:c2060783-2060515 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
