Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2028536..2028807 | Replicon | chromosome |
| Accession | NZ_CP028752 | ||
| Organism | Escherichia coli strain A23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2028666..2028769 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2028536..2028807 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY76_RS09750 | 2025091..2025753 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY76_RS09755 | 2025777..2026433 | - | 657 | WP_240770928.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY76_RS09760 | 2026535..2026765 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY76_RS09765 | 2026904..2027278 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| AOY76_RS09770 | 2027282..2028154 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| AOY76_RS09775 | 2028167..2028508 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2028536..2028807 | - | 272 | - | - | Antitoxin |
| - | 2028666..2028769 | + | 104 | - | - | Toxin |
| AOY76_RS09780 | 2028904..2029560 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| AOY76_RS09785 | 2029561..2029752 | - | 192 | WP_001338167.1 | YebW family protein | - |
| AOY76_RS09790 | 2029857..2030093 | - | 237 | WP_240770929.1 | DUF1480 family protein | - |
| AOY76_RS09795 | 2030211..2031650 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103588 NZ_CP028752:2028666-2028769 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103588 NZ_CP028752:c2028807-2028536 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
