Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2886588..2886856 | Replicon | chromosome |
| Accession | NZ_CP028751 | ||
| Organism | Escherichia coli strain A24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2886626..2886728 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2886588..2886856 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY77_RS14285 | 2883745..2885184 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY77_RS14290 | 2885302..2885538 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY77_RS14295 | 2885643..2885834 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY77_RS14300 | 2885835..2886491 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2886588..2886856 | + | 269 | - | - | Antitoxin |
| - | 2886626..2886728 | - | 103 | - | - | Toxin |
| AOY77_RS14305 | 2886886..2887227 | - | 342 | WP_000984819.1 | YebY family protein | - |
| AOY77_RS14310 | 2887240..2888112 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| AOY77_RS14315 | 2888116..2888490 | - | 375 | WP_096855620.1 | CopC domain-containing protein YobA | - |
| AOY77_RS14320 | 2888629..2888859 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY77_RS14325 | 2888962..2889618 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY77_RS14330 | 2889642..2890304 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103568 NZ_CP028751:c2886728-2886626 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103568 NZ_CP028751:2886588-2886856 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
