Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2562275..2562543 | Replicon | chromosome |
| Accession | NZ_CP028750 | ||
| Organism | Escherichia coli strain A25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2562313..2562415 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2562275..2562543 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY78_RS12550 | 2559432..2560871 | + | 1440 | WP_024242515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY78_RS12555 | 2560989..2561225 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY78_RS12560 | 2561330..2561521 | + | 192 | WP_001357784.1 | YebW family protein | - |
| AOY78_RS12565 | 2561522..2562178 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2562275..2562543 | + | 269 | - | - | Antitoxin |
| - | 2562313..2562415 | - | 103 | - | - | Toxin |
| AOY78_RS12570 | 2562572..2562913 | - | 342 | WP_024248237.1 | YebY family protein | - |
| AOY78_RS12575 | 2562926..2563798 | - | 873 | WP_000879327.1 | copper homeostasis membrane protein CopD | - |
| AOY78_RS12580 | 2563802..2564176 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| AOY78_RS12585 | 2564315..2564545 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY78_RS12590 | 2564647..2565303 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY78_RS12595 | 2565327..2565989 | + | 663 | WP_096841126.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103539 NZ_CP028750:c2562415-2562313 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103539 NZ_CP028750:2562275-2562543 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
