Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071207..2071475 | Replicon | chromosome |
| Accession | NZ_CP028749 | ||
| Organism | Escherichia coli strain A26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071335..2071437 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071207..2071475 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY79_RS09790 | 2067761..2068423 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY79_RS09795 | 2068446..2069102 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY79_RS09800 | 2069204..2069434 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY79_RS09805 | 2069573..2069947 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY79_RS09810 | 2069951..2070823 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| AOY79_RS09815 | 2070836..2071177 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2071207..2071475 | - | 269 | - | - | Antitoxin |
| - | 2071335..2071437 | + | 103 | - | - | Toxin |
| AOY79_RS09820 | 2071572..2072228 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| AOY79_RS09825 | 2072229..2072420 | - | 192 | WP_001317886.1 | YebW family protein | - |
| AOY79_RS09830 | 2072525..2072761 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY79_RS09835 | 2072879..2074318 | - | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103509 NZ_CP028749:2071335-2071437 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103509 NZ_CP028749:c2071475-2071207 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
