Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2175044..2175315 | Replicon | chromosome |
| Accession | NZ_CP028747 | ||
| Organism | Escherichia coli strain A28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2175174..2175277 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2175044..2175315 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY81_RS10640 | 2171599..2172261 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY81_RS10645 | 2172285..2172941 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY81_RS10650 | 2173043..2173273 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY81_RS10655 | 2173412..2173786 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY81_RS10660 | 2173790..2174662 | + | 873 | WP_000879273.1 | copper homeostasis membrane protein CopD | - |
| AOY81_RS10665 | 2174675..2175016 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2175044..2175315 | - | 272 | - | - | Antitoxin |
| - | 2175174..2175277 | + | 104 | - | - | Toxin |
| AOY81_RS10670 | 2175412..2176068 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AOY81_RS10675 | 2176069..2176260 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AOY81_RS10680 | 2176365..2176601 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY81_RS10685 | 2176719..2178158 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103467 NZ_CP028747:2175174-2175277 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103467 NZ_CP028747:c2175315-2175044 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
