Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2160105..2160376 | Replicon | chromosome |
| Accession | NZ_CP028745 | ||
| Organism | Escherichia coli strain A30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2160235..2160338 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2160105..2160376 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY83_RS10265 | 2156660..2157322 | - | 663 | WP_053291752.1 | exodeoxyribonuclease X | - |
| AOY83_RS10270 | 2157346..2158002 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY83_RS10275 | 2158104..2158334 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY83_RS10280 | 2158473..2158847 | + | 375 | WP_085453916.1 | CopC domain-containing protein YobA | - |
| AOY83_RS10285 | 2158851..2159723 | + | 873 | WP_097422336.1 | copper homeostasis membrane protein CopD | - |
| AOY83_RS10290 | 2159736..2160077 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2160105..2160376 | - | 272 | - | - | Antitoxin |
| - | 2160235..2160338 | + | 104 | - | - | Toxin |
| AOY83_RS10295 | 2160473..2161129 | + | 657 | WP_240767871.1 | protein-serine/threonine phosphatase | - |
| AOY83_RS10300 | 2161130..2161321 | - | 192 | WP_001313035.1 | YebW family protein | - |
| AOY83_RS10305 | 2161426..2161662 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY83_RS10310 | 2161780..2163219 | - | 1440 | WP_240767872.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103418 NZ_CP028745:2160235-2160338 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103418 NZ_CP028745:c2160376-2160105 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
