Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2770825..2771096 | Replicon | chromosome |
| Accession | NZ_CP028744 | ||
| Organism | Escherichia coli strain A31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2770863..2770966 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2770825..2771096 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY84_RS13290 | 2767982..2769421 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY84_RS13295 | 2769539..2769775 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY84_RS13300 | 2769880..2770071 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY84_RS13305 | 2770072..2770728 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2770825..2771096 | + | 272 | - | - | Antitoxin |
| - | 2770863..2770966 | - | 104 | - | - | Toxin |
| AOY84_RS13310 | 2771124..2771465 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AOY84_RS13315 | 2771478..2772350 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AOY84_RS13320 | 2772354..2772728 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY84_RS13325 | 2772867..2773097 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY84_RS13330 | 2773199..2773855 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY84_RS13335 | 2773879..2774541 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103394 NZ_CP028744:c2770966-2770863 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103394 NZ_CP028744:2770825-2771096 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
