Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2746063..2746334 | Replicon | chromosome |
| Accession | NZ_CP028740 | ||
| Organism | Escherichia coli strain A35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2746101..2746204 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2746063..2746334 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY88_RS13495 | 2743220..2744659 | + | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY88_RS13500 | 2744777..2745013 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY88_RS13505 | 2745118..2745309 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY88_RS13510 | 2745310..2745966 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 2746063..2746334 | + | 272 | - | - | Antitoxin |
| - | 2746101..2746204 | - | 104 | - | - | Toxin |
| AOY88_RS13515 | 2746362..2746703 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AOY88_RS13520 | 2746716..2747588 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AOY88_RS13525 | 2747592..2747966 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY88_RS13530 | 2748105..2748335 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY88_RS13535 | 2748437..2749093 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY88_RS13540 | 2749117..2749779 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103291 NZ_CP028740:c2746204-2746101 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103291 NZ_CP028740:2746063-2746334 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
