Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2473282..2473550 | Replicon | chromosome |
| Accession | NZ_CP028739 | ||
| Organism | Escherichia coli strain A36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2473410..2473512 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2473282..2473550 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY89_RS11890 | 2469835..2470497 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY89_RS11895 | 2470521..2471177 | - | 657 | WP_000011672.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY89_RS11900 | 2471279..2471509 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY89_RS11905 | 2471648..2472022 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY89_RS11910 | 2472026..2472898 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY89_RS11915 | 2472911..2473252 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2473282..2473550 | - | 269 | - | - | Antitoxin |
| - | 2473410..2473512 | + | 103 | - | - | Toxin |
| AOY89_RS11920 | 2473647..2474303 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| AOY89_RS11925 | 2474304..2474495 | - | 192 | WP_001317886.1 | YebW family protein | - |
| AOY89_RS11930 | 2474600..2474836 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY89_RS11935 | 2474955..2476394 | - | 1440 | WP_024262067.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103263 NZ_CP028739:2473410-2473512 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103263 NZ_CP028739:c2473550-2473282 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
