Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023079..2023350 | Replicon | chromosome |
| Accession | NZ_CP028737 | ||
| Organism | Escherichia coli strain A39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023209..2023312 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023079..2023350 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY92_RS09820 | 2019634..2020296 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY92_RS09825 | 2020320..2020976 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY92_RS09830 | 2021078..2021308 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY92_RS09835 | 2021447..2021821 | + | 375 | WP_240758065.1 | CopC domain-containing protein YobA | - |
| AOY92_RS09840 | 2021825..2022697 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AOY92_RS09845 | 2022710..2023051 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2023079..2023350 | - | 272 | - | - | Antitoxin |
| - | 2023209..2023312 | + | 104 | - | - | Toxin |
| AOY92_RS09850 | 2023447..2024103 | + | 657 | WP_021565248.1 | protein-serine/threonine phosphatase | - |
| AOY92_RS09855 | 2024104..2024295 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AOY92_RS09860 | 2024400..2024636 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY92_RS09865 | 2024754..2026193 | - | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103211 NZ_CP028737:2023209-2023312 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103211 NZ_CP028737:c2023350-2023079 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
