Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2160060..2160328 | Replicon | chromosome |
| Accession | NZ_CP028734 | ||
| Organism | Escherichia coli strain A42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2160188..2160290 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2160060..2160328 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY95_RS10360 | 2156614..2157276 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| AOY95_RS10365 | 2157300..2157956 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY95_RS10370 | 2158058..2158288 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY95_RS10375 | 2158427..2158801 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| AOY95_RS10380 | 2158805..2159677 | + | 873 | WP_001607483.1 | copper homeostasis membrane protein CopD | - |
| AOY95_RS10385 | 2159689..2160030 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2160060..2160328 | - | 269 | - | - | Antitoxin |
| - | 2160188..2160290 | + | 103 | - | - | Toxin |
| AOY95_RS10390 | 2160425..2161081 | + | 657 | WP_001607480.1 | protein-serine/threonine phosphatase | - |
| AOY95_RS10395 | 2161082..2161273 | - | 192 | WP_218068858.1 | YebW family protein | - |
| AOY95_RS10400 | 2161378..2161614 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY95_RS10405 | 2161731..2163170 | - | 1440 | WP_024186908.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103157 NZ_CP028734:2160188-2160290 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103157 NZ_CP028734:c2160328-2160060 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
