Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 4373032..4374746 Replicon chromosome
Accession NZ_CP028730
Organism Shewanella baltica strain 128

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag C7T95_RS18910 Protein ID WP_107949531.1
Coordinates 4373032..4373682 (+) Length 217 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag C7T95_RS18915 Protein ID WP_107949534.1
Coordinates 4373682..4374746 (+) Length 355 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C7T95_RS18895 4368894..4370312 + 1419 WP_107949527.1 DUF262 domain-containing protein -
C7T95_RS18900 4370305..4372323 + 2019 WP_107949529.1 DUF262 domain-containing HNH endonuclease family protein -
C7T95_RS18905 4372457..4372882 + 426 WP_199908764.1 DUF4433 domain-containing protein -
C7T95_RS18910 4373032..4373682 + 651 WP_107949531.1 DUF4433 domain-containing protein Toxin
C7T95_RS18915 4373682..4374746 + 1065 WP_107949534.1 macro domain-containing protein Antitoxin
C7T95_RS18920 4374919..4378020 + 3102 WP_107949536.1 HsdR family type I site-specific deoxyribonuclease -
C7T95_RS18925 4378020..4378730 + 711 WP_107949538.1 M48 family metallopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(17-216)

Antitoxin

Macro domain

(18-129)


Sequences

Toxin        


Download         Length: 217 a.a.        Molecular weight: 25054.57 Da        Isoelectric Point: 7.8615

>T103094 WP_107949531.1 NZ_CP028730:4373032-4373682 [Shewanella baltica]
MPYNYSGTLNAEKALIWRIVHRDNVPWILDNGLHCGSSKINSPSWVPIGSSELISKRATSSIPVSPHGFLNDYVPFYFTP
FSPMLLNIKSGRGVVQRHNDEIVILVSSLHRIGELGLDYVFTDMHAYYQWSRFYKDPTQLNQIDWAILQSRDFSRDMNDP
AKFERYQAEALVHRHCPVAALLGIICYDSKVEQQLKNWLQQRNMTIDVYARPGWYF

Download         Length: 651 bp

>T103094 NZ_CP028730:4373032-4373682 [Shewanella baltica]
ATGCCATATAACTATAGCGGTACTTTAAATGCTGAAAAAGCGCTTATTTGGCGTATCGTGCATCGCGACAATGTTCCGTG
GATTTTAGACAATGGTTTGCATTGTGGTAGCAGTAAAATCAACAGCCCCAGTTGGGTACCTATTGGCAGCAGTGAACTGA
TAAGCAAGCGCGCTACATCCTCGATACCAGTCTCGCCGCACGGTTTTTTGAATGACTATGTGCCGTTTTACTTTACGCCG
TTTTCGCCCATGCTGCTCAACATAAAATCTGGACGTGGTGTAGTACAACGGCATAATGATGAAATCGTTATTTTGGTGTC
ATCGTTACATCGGATCGGCGAATTAGGGCTCGATTATGTGTTTACCGACATGCACGCTTATTACCAGTGGTCTAGGTTTT
ACAAAGATCCGACGCAATTAAACCAGATTGACTGGGCTATTTTGCAAAGCCGCGACTTTAGCCGTGATATGAATGATCCG
GCCAAGTTTGAACGTTATCAAGCCGAGGCATTAGTGCACAGGCATTGTCCGGTAGCGGCATTACTGGGCATTATTTGCTA
CGATAGCAAAGTAGAGCAACAACTTAAAAATTGGTTACAGCAGCGCAACATGACAATAGATGTTTATGCTCGACCTGGGT
GGTACTTCTGA

Antitoxin


Download         Length: 355 a.a.        Molecular weight: 39886.13 Da        Isoelectric Point: 6.7507

>AT103094 WP_107949534.1 NZ_CP028730:4373682-4374746 [Shewanella baltica]
MITYTTGNLLDAPADALINTVNTVGVMGKGIALMFKERFPNNMQEYAKACKAKQVVTGKMFVTQPHELMGPRWIINFPTK
QHWKSPSKMEWIEEGLQDLRHFIINNKVRSIAIPPLGAGNGGLDWLQVKPRIEAALGDLIDVEVLIYEPTAQYQNVTAKV
GVKTLTPARALVAELIRRYWILGMDCSLLEIQKLAWFLQRIIERNGLKNELKLNFTANYYGPYANNLDHLLNALDGSYLK
ADKRIPDCDPLDVIWFNDAEKSTITAYLQSEAKHYLPALEKATQLIDGFESPYGMELLSTVDWLIAEAGCEPTMASISAG
IANWPAGPHWAKRKMTLFNEQSIQFALDRLQQFS

Download         Length: 1065 bp

>AT103094 NZ_CP028730:4373682-4374746 [Shewanella baltica]
ATGATTACATATACAACAGGCAATTTACTTGATGCTCCAGCTGATGCACTGATCAATACAGTGAATACCGTGGGTGTGAT
GGGTAAGGGAATTGCGTTGATGTTTAAAGAGCGCTTCCCTAACAATATGCAGGAGTACGCCAAAGCTTGTAAGGCGAAAC
AGGTTGTCACCGGCAAGATGTTTGTGACGCAACCCCATGAGCTGATGGGGCCGCGCTGGATTATTAACTTCCCAACTAAA
CAGCATTGGAAGTCTCCATCCAAAATGGAATGGATTGAGGAAGGGTTGCAAGACCTGCGTCATTTCATCATTAACAACAA
GGTGCGATCTATCGCTATTCCGCCGCTTGGCGCTGGTAATGGTGGGCTTGACTGGTTGCAGGTGAAACCCCGGATTGAAG
CTGCTCTAGGTGATTTAATTGATGTCGAAGTACTGATCTATGAGCCCACAGCGCAATACCAAAATGTTACTGCCAAAGTG
GGGGTTAAAACGTTAACGCCTGCCAGAGCATTAGTCGCGGAGTTGATCAGACGCTATTGGATCCTCGGGATGGACTGTAG
CTTGTTAGAGATCCAAAAGCTTGCTTGGTTTTTGCAGCGGATCATCGAGCGGAATGGCCTTAAAAATGAACTGAAGTTGA
ACTTTACGGCCAATTATTATGGTCCCTATGCGAACAATTTAGACCACTTACTCAATGCGCTGGATGGCAGTTATTTAAAA
GCAGATAAGCGCATCCCTGATTGTGATCCGCTTGATGTTATTTGGTTTAACGATGCTGAGAAAAGTACCATTACTGCGTA
CCTTCAAAGTGAAGCGAAGCACTACTTGCCCGCTTTAGAAAAGGCGACACAACTGATCGATGGCTTTGAATCACCCTATG
GCATGGAATTACTTTCGACCGTAGATTGGCTTATTGCTGAGGCGGGTTGTGAACCTACAATGGCATCTATAAGCGCAGGT
ATTGCTAACTGGCCAGCAGGACCGCATTGGGCGAAGCGTAAAATGACATTATTTAATGAGCAAAGTATTCAGTTCGCCTT
AGACCGCTTGCAGCAATTTAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References