Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4004334..4004479 | Replicon | chromosome |
| Accession | NZ_CP028716 | ||
| Organism | Klebsiella pneumoniae strain SCM96 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4004341..4004443 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4004334..4004479 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA106_RS20070 | 3999865..4001298 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DA106_RS20075 | 4001414..4001653 | + | 240 | WP_002911393.1 | YebV family protein | - |
| DA106_RS20080 | 4001751..4001942 | + | 192 | WP_002911395.1 | YebW family protein | - |
| DA106_RS20085 | 4001939..4002592 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| DA106_RS20090 | 4002749..4003717 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DA106_RS28295 | 4003822..4003965 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4004334..4004479 | + | 146 | - | - | Antitoxin |
| - | 4004341..4004443 | - | 103 | - | - | Toxin |
| DA106_RS20100 | 4004602..4004940 | - | 339 | WP_002911404.1 | YebY family protein | - |
| DA106_RS20105 | 4004957..4005826 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| DA106_RS20110 | 4005830..4006204 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DA106_RS20115 | 4006317..4006547 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DA106_RS20120 | 4006626..4007285 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| DA106_RS20125 | 4007289..4009349 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103029 NZ_CP028716:c4004443-4004341 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT103029 NZ_CP028716:4004334-4004479 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
