Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2782710..2782981 | Replicon | chromosome |
| Accession | NZ_CP028703 | ||
| Organism | Escherichia coli strain ME8067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2782748..2782851 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2782710..2782981 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB47_RS14520 | 2779867..2781306 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DBB47_RS14525 | 2781424..2781660 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DBB47_RS14530 | 2781765..2781956 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DBB47_RS14535 | 2781957..2782613 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2782710..2782981 | + | 272 | - | - | Antitoxin |
| - | 2782748..2782851 | - | 104 | - | - | Toxin |
| DBB47_RS14540 | 2783009..2783350 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DBB47_RS14545 | 2783363..2784235 | - | 873 | WP_108118734.1 | copper homeostasis membrane protein CopD | - |
| DBB47_RS14550 | 2784239..2784613 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DBB47_RS14555 | 2784752..2784982 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DBB47_RS14560 | 2785084..2785740 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DBB47_RS14565 | 2785764..2786426 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103003 NZ_CP028703:c2782851-2782748 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103003 NZ_CP028703:2782710-2782981 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
