Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2356394..2356665 | Replicon | chromosome |
| Accession | NZ_CP028702 | ||
| Organism | Escherichia coli strain J53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2356432..2356535 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2356394..2356665 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB46_RS12405 | 2353551..2354990 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DBB46_RS12410 | 2355108..2355344 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DBB46_RS12415 | 2355449..2355640 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DBB46_RS12420 | 2355641..2356297 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2356394..2356665 | + | 272 | - | - | Antitoxin |
| - | 2356432..2356535 | - | 104 | - | - | Toxin |
| DBB46_RS12425 | 2356693..2357034 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DBB46_RS12430 | 2357047..2357919 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DBB46_RS12435 | 2357923..2358297 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DBB46_RS12440 | 2358436..2358666 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DBB46_RS12445 | 2358768..2359424 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DBB46_RS12450 | 2359448..2360110 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T102959 NZ_CP028702:c2356535-2356432 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT102959 NZ_CP028702:2356394-2356665 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
