Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | paaR-paaA-parE/- |
Location | 3600428..3600906 | Replicon | chromosome |
Accession | NZ_CP028683 | ||
Organism | Escherichia coli strain 112 |
Toxin (Protein)
Gene name | parE_1 | Uniprot ID | A0A891SFN9 |
Locus tag | C9E41_RS19235 | Protein ID | WP_001303876.1 |
Coordinates | 3600619..3600906 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | paaA | Uniprot ID | Q8XD67 |
Locus tag | C9E41_RS19230 | Protein ID | WP_000536233.1 |
Coordinates | 3600428..3600619 (+) | Length | 64 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C9E41_RS19195 | 3595832..3596602 | - | 771 | WP_000450992.1 | DUF1627 domain-containing protein | - |
C9E41_RS19200 | 3596624..3597370 | - | 747 | WP_000788751.1 | ATP-binding protein | - |
C9E41_RS19205 | 3597377..3598468 | - | 1092 | WP_001205823.1 | hypothetical protein | - |
C9E41_RS19210 | 3598547..3599002 | + | 456 | WP_000273724.1 | hypothetical protein | - |
C9E41_RS19215 | 3599209..3599634 | - | 426 | WP_000693855.1 | Rha family transcriptional regulator | - |
C9E41_RS19220 | 3599618..3599890 | - | 273 | WP_000887453.1 | helix-turn-helix domain-containing protein | - |
C9E41_RS19225 | 3599999..3600400 | + | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
C9E41_RS19230 | 3600428..3600619 | + | 192 | WP_000536233.1 | hypothetical protein | Antitoxin |
C9E41_RS19235 | 3600619..3600906 | + | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C9E41_RS19245 | 3601184..3601339 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
C9E41_RS19250 | 3601481..3601870 | + | 390 | WP_000394511.1 | hypothetical protein | - |
C9E41_RS19255 | 3602057..3602242 | - | 186 | WP_001133046.1 | hypothetical protein | - |
C9E41_RS19265 | 3602816..3603004 | + | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
C9E41_RS19270 | 3603001..3603192 | + | 192 | WP_001098307.1 | DUF1482 family protein | - |
C9E41_RS19275 | 3603286..3605757 | + | 2472 | WP_000034474.1 | exonuclease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 10978.84 Da Isoelectric Point: 10.1360
>T102695 WP_001303876.1 NZ_CP028683:3600619-3600906 [Escherichia coli]
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI
MLPILWLPSARDDLRQIITYIAKENPPAARRLKIRIETSVLPLSEHPYLYPPSERVSGLREIVTHPNYIILYRVAASSIE
IVSVTHSRRQFPFSI
Download Length: 288 bp
>T102695 NZ_CP028683:3600619-3600906 [Escherichia coli]
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA
ATGTTACCCATTTTATGGCTACCGTCTGCTCGCGATGATTTGCGCCAGATCATAACTTACATCGCCAAGGAGAACCCACC
GGCAGCACGTAGACTAAAAATACGCATTGAAACATCGGTATTACCTCTATCTGAGCATCCGTACTTATATCCACCAAGCG
AACGGGTTTCTGGATTGAGAGAGATCGTGACCCACCCTAACTACATAATCCTGTACAGAGTAGCTGCTTCAAGCATTGAG
ATTGTAAGCGTGACACATTCTCGGCGACAATTTCCCTTCTCTATCTGA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7025.80 Da Isoelectric Point: 4.0270
>AT102695 WP_000536233.1 NZ_CP028683:3600428-3600619 [Escherichia coli]
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE
MGTALSPIVSEFETTEQENSYNEWLRTKVTSSLADTRPAIPHDEVMAEMENLIAQIAVTNKSE
Download Length: 192 bp
>AT102695 NZ_CP028683:3600428-3600619 [Escherichia coli]
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA
ATGGGTACAGCCCTTTCTCCGATAGTTTCAGAATTCGAAACTACCGAACAAGAAAACAGTTACAACGAATGGTTGCGCAC
TAAAGTAACGTCAAGCCTTGCAGACACTCGCCCCGCAATTCCACATGACGAGGTAATGGCTGAAATGGAAAATCTTATTG
CTCAAATTGCTGTAACTAACAAGAGCGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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