Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2188705..2188976 | Replicon | chromosome |
| Accession | NZ_CP028674 | ||
| Organism | Escherichia coli strain 115 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2188835..2188938 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2188705..2188976 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E44_RS11030 | 2185260..2185922 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| C9E44_RS11035 | 2185946..2186602 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E44_RS11040 | 2186704..2186934 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E44_RS11045 | 2187073..2187447 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E44_RS11050 | 2187451..2188323 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E44_RS11055 | 2188336..2188677 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2188705..2188976 | - | 272 | - | - | Antitoxin |
| - | 2188835..2188938 | + | 104 | - | - | Toxin |
| C9E44_RS11060 | 2189073..2189729 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| C9E44_RS11065 | 2189730..2189921 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C9E44_RS11070 | 2190026..2190262 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E44_RS11075 | 2190380..2191819 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T102577 NZ_CP028674:2188835-2188938 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT102577 NZ_CP028674:c2188976-2188705 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
