Detailed information of TA system TA102561

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): ccdAB/CcdA(antitoxin)
• Location: 4646011..4646561
• Replicon: chromosome
• Accession: NZ_CP028671
• Organism: Escherichia coli strain 116

Toxin (Protein)

• Gene name: ccdB
• Uniprot ID: D3H432
• Locus tag: C9E45_RS23975
• Protein ID: WP_001160975.1
• Coordinates: 4646011..4646325 (-)
• Length: 105 a.a.

Antitoxin (Protein)

• Gene name: ccdA
• Uniprot ID: V0VEX8
• Locus tag: C9E45_RS23980
• Protein ID: WP_000125566.1
• Coordinates: 4646328..4646561 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C9E45_RS23950	4641686..4642972	+	1287	WP_000800457.1	peptidylprolyl isomerase SurA	-
C9E45_RS23955	4642972..4643961	+	990	WP_000241259.1	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	-
C9E45_RS23960	4643958..4644779	+	822	WP_001065380.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
C9E45_RS23965	4644782..4645159	+	378	WP_000610901.1	Co2+/Mg2+ efflux protein ApaG	-
C9E45_RS23970	4645166..4646014	+	849	WP_000257187.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH	-
C9E45_RS23975	4646011..4646325	-	315	WP_001160975.1	CcdB family protein	Toxin
C9E45_RS23980	4646328..4646561	-	234	WP_000125566.1	type II toxin-antitoxin system CcdA family antitoxin	Antitoxin
C9E45_RS23985	4646647..4647126	-	480	WP_000624372.1	type 3 dihydrofolate reductase	-
C9E45_RS23990	4647318..4649180	-	1863	WP_000377184.1	glutathione-regulated potassium-efflux system protein KefC	-
C9E45_RS23995	4649173..4649703	-	531	WP_000600700.1	glutathione-regulated potassium-efflux system oxidoreductase KefF	-
C9E45_RS24000	4649811..4651142	-	1332	WP_001183179.1	MFS transporter	-
C9E45_RS24005	4651200..4651487	-	288	WP_000203741.1	ferredoxin-like protein FixX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin CcdB (2-103)

Antitoxin

• Post-segregation antitoxin CcdA (8-77)

Sequences

Toxin

Protein

• Length: 105 a.a.
• Molecular weight: 11711.76 Da
• Isoelectric Point: 9.8517

>T102561 WP_001160975.1 NZ_CP028671:c4646325-4646011 [Escherichia coli]
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIKGALDFMLDGI

Nucleotide

• Length: 315 bp

>T102561 NZ_CP028671:c4646325-4646011 [Escherichia coli]
ATGCAATTTACGGTATACCGCAGTCGCAGCAGGAACGCCGCGTTTCCCTTTGTTATCGATGTTACCAGCGACATTATTGG
TGTGATTAATCGCCGTATTGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGGTAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAAGGAGCATTAGATTTTATGCTCGACGGGATTTAA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8530.53 Da
• Isoelectric Point: 5.8062

>AT102561 WP_000125566.1 NZ_CP028671:c4646561-4646328 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Nucleotide

• Length: 234 bp

>AT102561 NZ_CP028671:c4646561-4646328 [Escherichia coli]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CTGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Structures

Antitoxin

• AlphaFold DB: A0A7U9LTM9