Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3360409..3360680 | Replicon | chromosome |
| Accession | NZ_CP028650 | ||
| Organism | Escherichia coli strain 124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3360447..3360550 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3360409..3360680 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E53_RS17625 | 3357566..3359005 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C9E53_RS17630 | 3359123..3359359 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E53_RS17635 | 3359464..3359655 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C9E53_RS17640 | 3359656..3360312 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3360409..3360680 | + | 272 | - | - | Antitoxin |
| - | 3360447..3360550 | - | 104 | - | - | Toxin |
| C9E53_RS17645 | 3360708..3361049 | - | 342 | WP_000976483.1 | YebY family protein | - |
| C9E53_RS17650 | 3361062..3361934 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E53_RS17655 | 3361938..3362312 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E53_RS17660 | 3362451..3362681 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E53_RS17665 | 3362783..3363439 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E53_RS17670 | 3363463..3364125 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T102270 NZ_CP028650:c3360550-3360447 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT102270 NZ_CP028650:3360409-3360680 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
