Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2195646..2195917 | Replicon | chromosome |
| Accession | NZ_CP028609 | ||
| Organism | Escherichia coli strain 142 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2195776..2195879 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2195646..2195917 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E66_RS11110 | 2192201..2192863 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| C9E66_RS11115 | 2192887..2193543 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E66_RS11120 | 2193645..2193875 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E66_RS11125 | 2194014..2194388 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E66_RS11130 | 2194392..2195264 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E66_RS11135 | 2195277..2195618 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2195646..2195917 | - | 272 | - | - | Antitoxin |
| - | 2195776..2195879 | + | 104 | - | - | Toxin |
| C9E66_RS11140 | 2196014..2196670 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| C9E66_RS11145 | 2196671..2196862 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C9E66_RS11150 | 2196967..2197203 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E66_RS11155 | 2197321..2198760 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101795 NZ_CP028609:2195776-2195879 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101795 NZ_CP028609:c2195917-2195646 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
