Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2291902..2292173 | Replicon | chromosome |
| Accession | NZ_CP028603 | ||
| Organism | Escherichia coli strain 144 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2292032..2292135 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2291902..2292173 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E68_RS11750 | 2288457..2289119 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| C9E68_RS11755 | 2289143..2289799 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E68_RS11760 | 2289901..2290131 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E68_RS11765 | 2290270..2290644 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E68_RS11770 | 2290648..2291520 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E68_RS11775 | 2291533..2291874 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2291902..2292173 | - | 272 | - | - | Antitoxin |
| - | 2292032..2292135 | + | 104 | - | - | Toxin |
| C9E68_RS11780 | 2292270..2292926 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| C9E68_RS11785 | 2292927..2293118 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C9E68_RS11790 | 2293223..2293459 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E68_RS11795 | 2293577..2295016 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2284561..2308014 | 23453 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101727 NZ_CP028603:2292032-2292135 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101727 NZ_CP028603:c2292173-2291902 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
