Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2284283..2284554 | Replicon | chromosome |
| Accession | NZ_CP028596 | ||
| Organism | Escherichia coli strain 149 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2284413..2284516 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2284283..2284554 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E71_RS11725 | 2280838..2281500 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| C9E71_RS11730 | 2281524..2282180 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E71_RS11735 | 2282282..2282512 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E71_RS11740 | 2282651..2283025 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E71_RS11745 | 2283029..2283901 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E71_RS11750 | 2283914..2284255 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2284283..2284554 | - | 272 | - | - | Antitoxin |
| - | 2284413..2284516 | + | 104 | - | - | Toxin |
| C9E71_RS11755 | 2284651..2285307 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| C9E71_RS11760 | 2285308..2285499 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C9E71_RS11765 | 2285604..2285840 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E71_RS11770 | 2285958..2287397 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101621 NZ_CP028596:2284413-2284516 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101621 NZ_CP028596:c2284554-2284283 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
