Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2035752..2036023 | Replicon | chromosome |
| Accession | NZ_CP028578 | ||
| Organism | Escherichia coli strain WCHEC005784 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2035882..2035985 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2035752..2036023 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBQ99_RS11635 | 2032307..2032969 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DBQ99_RS11640 | 2032993..2033649 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DBQ99_RS11645 | 2033751..2033981 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DBQ99_RS11650 | 2034120..2034494 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DBQ99_RS11655 | 2034498..2035370 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DBQ99_RS11660 | 2035383..2035724 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2035752..2036023 | - | 272 | - | - | Antitoxin |
| - | 2035882..2035985 | + | 104 | - | - | Toxin |
| DBQ99_RS11665 | 2036120..2036776 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| DBQ99_RS11670 | 2036777..2036968 | - | 192 | WP_000457842.1 | YebW family protein | - |
| DBQ99_RS11675 | 2037073..2037309 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DBQ99_RS11680 | 2037427..2038866 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101483 NZ_CP028578:2035882-2035985 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101483 NZ_CP028578:c2036023-2035752 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
