Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2765012..2765213 | Replicon | chromosome |
| Accession | NZ_CP028538 | ||
| Organism | Enterobacter hormaechei strain SCEH020042 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2765017..2765120 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2765012..2765213 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBP88_RS15485 | 2761280..2762722 | + | 1443 | WP_074132810.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DBP88_RS15490 | 2762827..2763066 | + | 240 | WP_006811010.1 | YebV family protein | - |
| DBP88_RS15495 | 2763101..2763745 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| DBP88_RS15500 | 2763913..2764893 | + | 981 | WP_108168661.1 | VirK/YbjX family protein | - |
| - | 2765012..2765213 | + | 202 | - | - | Antitoxin |
| - | 2765017..2765120 | - | 104 | - | - | Toxin |
| DBP88_RS15515 | 2765262..2765600 | - | 339 | WP_022648464.1 | YebY family protein | - |
| DBP88_RS15520 | 2765617..2766486 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| DBP88_RS15525 | 2766488..2766859 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| DBP88_RS15530 | 2766997..2767227 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| DBP88_RS15535 | 2767339..2767977 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| DBP88_RS15540 | 2768002..2768664 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101369 NZ_CP028538:c2765120-2765017 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT101369 NZ_CP028538:2765012-2765213 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
