Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2881041..2881185 | Replicon | chromosome |
| Accession | NZ_CP028520 | ||
| Organism | Lelliottia sp. WB101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2881080..2881180 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2881041..2881185 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAI21_RS13775 | 2877512..2878174 | - | 663 | WP_100779793.1 | exodeoxyribonuclease X | - |
| DAI21_RS13780 | 2878199..2878855 | - | 657 | WP_107703365.1 | carbon-nitrogen hydrolase family protein | - |
| DAI21_RS13785 | 2878966..2879196 | - | 231 | WP_100779795.1 | DNA polymerase III subunit theta | - |
| DAI21_RS13790 | 2879334..2879708 | + | 375 | WP_100779796.1 | CopC domain-containing protein YobA | - |
| DAI21_RS13795 | 2879710..2880581 | + | 872 | Protein_2602 | copper homeostasis membrane protein CopD | - |
| DAI21_RS13800 | 2880597..2880935 | + | 339 | WP_100779798.1 | YebY family protein | - |
| - | 2881041..2881185 | - | 145 | - | - | Antitoxin |
| - | 2881080..2881180 | + | 101 | - | - | Toxin |
| DAI21_RS13810 | 2881341..2882282 | - | 942 | WP_107703366.1 | VirK/YbjX family protein | - |
| DAI21_RS13815 | 2882451..2883095 | + | 645 | WP_107703367.1 | protein-serine/threonine phosphatase | - |
| DAI21_RS13820 | 2883096..2883287 | - | 192 | WP_100779801.1 | YebW family protein | - |
| DAI21_RS13825 | 2883392..2883631 | - | 240 | WP_100779802.1 | YebV family protein | - |
| DAI21_RS13830 | 2883736..2885178 | - | 1443 | WP_107703368.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 bp
>T101353 NZ_CP028520:2881080-2881180 [Lelliottia sp. WB101]
AGGCGACTTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGG
AATCGTATTCGGTCTCTTTTT
AGGCGACTTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGG
AATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT101353 NZ_CP028520:c2881185-2881041 [Lelliottia sp. WB101]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAAGTCGCCTGACACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAAGTCGCCTGACACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
