Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2159293..2159408 | Replicon | chromosome |
| Accession | NZ_CP028487 | ||
| Organism | Yersinia massiliensis strain GTA | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2159312..2159404 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2159293..2159408 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA391_RS24200 | 2154457..2154609 | - | 153 | WP_155410999.1 | hypothetical protein | - |
| DA391_RS10145 | 2154892..2155848 | + | 957 | WP_050285736.1 | prolyl aminopeptidase | - |
| DA391_RS10150 | 2155894..2156127 | - | 234 | WP_108087672.1 | DNA polymerase III subunit theta | - |
| DA391_RS10155 | 2156521..2157030 | + | 510 | WP_019210237.1 | non-heme ferritin | - |
| DA391_RS10160 | 2157424..2157810 | + | 387 | WP_050080589.1 | CopC domain-containing protein YobA | - |
| DA391_RS10165 | 2157812..2158696 | + | 885 | WP_108087673.1 | copper homeostasis membrane protein CopD | - |
| DA391_RS10170 | 2158794..2159135 | + | 342 | WP_108087674.1 | YebY family protein | - |
| - | 2159293..2159408 | - | 116 | - | - | Antitoxin |
| - | 2159312..2159404 | + | 93 | - | - | Toxin |
| DA391_RS10175 | 2159470..2159655 | - | 186 | Protein_1946 | tyrosine-type recombinase/integrase | - |
| DA391_RS10180 | 2159750..2160151 | - | 402 | WP_108088266.1 | VOC family protein | - |
| DA391_RS10185 | 2160979..2161299 | - | 321 | WP_050080592.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 bp
>T101329 NZ_CP028487:2159312-2159404 [Yersinia massiliensis]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
Antitoxin
Download Length: 116 bp
>AT101329 NZ_CP028487:c2159408-2159293 [Yersinia massiliensis]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
