Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 1997221..1997768 | Replicon | chromosome |
| Accession | NZ_CP028481 | ||
| Organism | Vibrio parahaemolyticus strain S107-1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A7Z2MSV0 |
| Locus tag | DA442_RS10130 | Protein ID | WP_025527253.1 |
| Coordinates | 1997221..1997523 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3A269 |
| Locus tag | DA442_RS10135 | Protein ID | WP_005448240.1 |
| Coordinates | 1997511..1997768 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA442_RS10070 | 1992262..1992654 | - | 393 | WP_031846623.1 | hypothetical protein | - |
| DA442_RS10075 | 1992812..1993216 | - | 405 | WP_031846622.1 | DUF1801 domain-containing protein | - |
| DA442_RS10085 | 1993354..1994367 | - | 1014 | WP_031846621.1 | hypothetical protein | - |
| DA442_RS10090 | 1994512..1994880 | - | 369 | WP_031846627.1 | hypothetical protein | - |
| DA442_RS10095 | 1994893..1995054 | - | 162 | Protein_1832 | DUF3265 domain-containing protein | - |
| DA442_RS10105 | 1995381..1995473 | - | 93 | WP_079771035.1 | DUF3265 domain-containing protein | - |
| DA442_RS10110 | 1995488..1996594 | - | 1107 | WP_134990605.1 | hypothetical protein | - |
| DA442_RS10115 | 1996626..1996718 | - | 93 | WP_074050578.1 | DUF3265 domain-containing protein | - |
| DA442_RS10120 | 1996733..1997065 | - | 333 | WP_064484111.1 | hypothetical protein | - |
| DA442_RS10125 | 1997093..1997185 | - | 93 | WP_079771034.1 | DUF3265 domain-containing protein | - |
| DA442_RS10130 | 1997221..1997523 | - | 303 | WP_025527253.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| DA442_RS10135 | 1997511..1997768 | - | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| DA442_RS10140 | 1997939..1998373 | - | 435 | WP_025441728.1 | GNAT family N-acetyltransferase | - |
| DA442_RS10145 | 1998489..1999121 | - | 633 | WP_031846520.1 | DUF2971 domain-containing protein | - |
| DA442_RS10150 | 1999270..1999716 | - | 447 | WP_031846521.1 | GNAT family N-acetyltransferase | - |
| DA442_RS10155 | 1999745..1999837 | - | 93 | WP_074190183.1 | DUF3265 domain-containing protein | - |
| DA442_RS10160 | 1999852..2000346 | - | 495 | WP_025630543.1 | hypothetical protein | - |
| DA442_RS10165 | 2000382..2000513 | - | 132 | WP_079771033.1 | DUF3265 domain-containing protein | - |
| DA442_RS10175 | 2001002..2001091 | - | 90 | WP_079771037.1 | DUF3265 domain-containing protein | - |
| DA442_RS10180 | 2001612..2001752 | - | 141 | WP_079771036.1 | DUF3265 domain-containing protein | - |
| DA442_RS10185 | 2001724..2002140 | - | 417 | WP_031846305.1 | VOC family protein | - |
| DA442_RS26110 | 2002315..2002566 | - | 252 | WP_209019883.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1918267..2031908 | 113641 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11640.53 Da Isoelectric Point: 4.8951
>T101280 WP_025527253.1 NZ_CP028481:c1997523-1997221 [Vibrio parahaemolyticus]
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLEAFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
MAEIIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLEAFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
Download Length: 303 bp
>T101280 NZ_CP028481:c1997523-1997221 [Vibrio parahaemolyticus]
ATGGCTGAAATAATCTGGACTGAGCCAGCGCTATCCGACCTCAATGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAACAATTGGTTCAAACGATCTTTTCTAAAGTCGAGCGCTTAGAGGCTTTCCCTGAGTCGGGTCGTATTCCGC
CTGAACTAGAACATCTAAGCTATCGTGAAGTTGTAGTTAATCCGTGCCGCGTTTTCTATAAACAAGACGGCGACAAAGTA
TTTATTCTGTTTGTAATGCGTGCTGAGAGAGACTTACGTAAGTTCCTATTGAGTAAGCAATAA
ATGGCTGAAATAATCTGGACTGAGCCAGCGCTATCCGACCTCAATGATATCGCTGAATACATCGCACTTGAAAATATCGT
AGCTGCAAAACAATTGGTTCAAACGATCTTTTCTAAAGTCGAGCGCTTAGAGGCTTTCCCTGAGTCGGGTCGTATTCCGC
CTGAACTAGAACATCTAAGCTATCGTGAAGTTGTAGTTAATCCGTGCCGCGTTTTCTATAAACAAGACGGCGACAAAGTA
TTTATTCTGTTTGTAATGCGTGCTGAGAGAGACTTACGTAAGTTCCTATTGAGTAAGCAATAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9606.10 Da Isoelectric Point: 6.7269
>AT101280 WP_005448240.1 NZ_CP028481:c1997768-1997511 [Vibrio parahaemolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT101280 NZ_CP028481:c1997768-1997511 [Vibrio parahaemolyticus]
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACAAAAATCCTTGCCGATCTCCACGACACTAAAGAACCAGT
GTTAATTACCGAGCATGGTAAGCCATCGGCATATCTGGTTGATGTTGATGATTACGAGTTTATGCAAAATCGTTTGGCGA
TTCTGGAGGGGATTGCACGAGGTGAACGTGCATTAGCGGACGGTAAAGTGGTGAGTCACGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAATAA
ATGAAAGTAGAACTAGTTACATCACTCAAACGTCAAGCAACAAAAATCCTTGCCGATCTCCACGACACTAAAGAACCAGT
GTTAATTACCGAGCATGGTAAGCCATCGGCATATCTGGTTGATGTTGATGATTACGAGTTTATGCAAAATCGTTTGGCGA
TTCTGGAGGGGATTGCACGAGGTGAACGTGCATTAGCGGACGGTAAAGTGGTGAGTCACGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7Z2MSV0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A432DGX8 |