Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916948..1917093 | Replicon | chromosome |
| Accession | NZ_CP028478 | ||
| Organism | Klebsiella pneumoniae strain 2e | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916984..1917086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916948..1917093 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA795_RS09655 | 1912078..1914138 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DA795_RS09660 | 1914142..1914801 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DA795_RS09665 | 1914880..1915110 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DA795_RS09670 | 1915223..1915597 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DA795_RS09675 | 1915601..1916470 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| DA795_RS09680 | 1916487..1916825 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1916948..1917093 | - | 146 | - | - | Antitoxin |
| - | 1916984..1917086 | + | 103 | - | - | Toxin |
| DA795_RS27475 | 1917461..1917604 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DA795_RS09690 | 1917709..1918677 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DA795_RS09695 | 1918834..1919487 | + | 654 | WP_122051203.1 | protein-serine/threonine phosphatase | - |
| DA795_RS09700 | 1919484..1919675 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DA795_RS09705 | 1919773..1920012 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DA795_RS09710 | 1920128..1921561 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T101262 NZ_CP028478:1916984-1917086 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT101262 NZ_CP028478:c1917093-1916948 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
