Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2280431..2280702 | Replicon | chromosome |
| Accession | NZ_CP028432 | ||
| Organism | Escherichia coli strain RM9975 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2280469..2280572 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2280431..2280702 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM9975_RS12305 | 2277588..2279027 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECRM9975_RS12310 | 2279145..2279381 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECRM9975_RS12315 | 2279486..2279677 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECRM9975_RS12320 | 2279678..2280334 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2280431..2280702 | + | 272 | - | - | Antitoxin |
| - | 2280469..2280572 | - | 104 | - | - | Toxin |
| ECRM9975_RS12325 | 2280730..2281071 | - | 342 | WP_000976492.1 | YebY family protein | - |
| ECRM9975_RS12330 | 2281084..2281956 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| ECRM9975_RS12335 | 2281960..2282334 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECRM9975_RS12340 | 2282473..2282703 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECRM9975_RS12345 | 2282805..2283461 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECRM9975_RS12350 | 2283485..2284147 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101195 NZ_CP028432:c2280572-2280469 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101195 NZ_CP028432:2280431-2280702 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
