Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2004014..2004159 | Replicon | chromosome |
| Accession | NZ_CP028391 | ||
| Organism | Klebsiella pneumoniae strain WCHKP13F2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2004050..2004152 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2004014..2004159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7D34_RS12190 | 1999144..2001204 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| B7D34_RS12195 | 2001208..2001867 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| B7D34_RS12200 | 2001946..2002176 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B7D34_RS12205 | 2002289..2002663 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| B7D34_RS12210 | 2002667..2003536 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| B7D34_RS12215 | 2003550..2003891 | + | 342 | WP_015874944.1 | YebY family protein | - |
| - | 2004014..2004159 | - | 146 | - | - | Antitoxin |
| - | 2004050..2004152 | + | 103 | - | - | Toxin |
| B7D34_RS12220 | 2004194..2004385 | - | 192 | WP_004175432.1 | hypothetical protein | - |
| B7D34_RS12225 | 2004775..2005665 | - | 891 | WP_085388938.1 | VirK/YbjX family protein | - |
| B7D34_RS12230 | 2005900..2006553 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| B7D34_RS12235 | 2006550..2006741 | - | 192 | WP_002911395.1 | YebW family protein | - |
| B7D34_RS12240 | 2006839..2007078 | - | 240 | WP_002911393.1 | YebV family protein | - |
| B7D34_RS12245 | 2007194..2008627 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T101127 NZ_CP028391:2004050-2004152 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT101127 NZ_CP028391:c2004159-2004014 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
