Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2207536..2207807 | Replicon | chromosome |
| Accession | NZ_CP028381 | ||
| Organism | Escherichia coli strain RM10466 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2207574..2207677 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2207536..2207807 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7R96_RS11900 | 2204693..2206132 | + | 1440 | WP_109996800.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C7R96_RS11905 | 2206250..2206486 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7R96_RS11910 | 2206591..2206782 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C7R96_RS11915 | 2206783..2207439 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2207536..2207807 | + | 272 | - | - | Antitoxin |
| - | 2207574..2207677 | - | 104 | - | - | Toxin |
| C7R96_RS11920 | 2207835..2208176 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C7R96_RS11925 | 2208189..2209061 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C7R96_RS11930 | 2209065..2209439 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7R96_RS11935 | 2209578..2209808 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7R96_RS11940 | 2209910..2210565 | + | 656 | Protein_2179 | carbon-nitrogen hydrolase family protein | - |
| C7R96_RS11945 | 2210589..2211251 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101083 NZ_CP028381:c2207677-2207574 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101083 NZ_CP028381:2207536-2207807 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
