Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2333915..2334183 | Replicon | chromosome |
| Accession | NZ_CP028379 | ||
| Organism | Escherichia coli O145 str. RM9872 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2333953..2334056 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2333915..2334183 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3Y_RS12180 | 2331072..2332511 | + | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I3Y_RS12185 | 2332629..2332865 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I3Y_RS12190 | 2332970..2333161 | + | 192 | WP_001313035.1 | YebW family protein | - |
| I3Y_RS12195 | 2333162..2333818 | - | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| - | 2333915..2334183 | + | 269 | - | - | Antitoxin |
| - | 2333953..2334056 | - | 104 | - | - | Toxin |
| I3Y_RS12200 | 2334213..2334554 | - | 342 | WP_000976475.1 | YebY family protein | - |
| I3Y_RS12205 | 2334567..2335439 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| I3Y_RS12210 | 2335443..2335817 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| I3Y_RS12215 | 2335956..2336186 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I3Y_RS12220 | 2336288..2336944 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| I3Y_RS12225 | 2336968..2337630 | + | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101058 NZ_CP028379:c2334056-2333953 [Escherichia coli O145 str. RM9872]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT101058 NZ_CP028379:2333915-2334183 [Escherichia coli O145 str. RM9872]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
