Detailed information of TA system TA100987

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RHH(antitoxin)
• Location: 17898..18445
• Replicon: chromosome
• Accession: NZ_CP028339
• Organism: Thauera aromatica K172

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: Tharo_RS00065
• Protein ID: WP_107219448.1
• Coordinates: 18167..18445 (+)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: Tharo_RS00060
• Protein ID: WP_107219447.1
• Coordinates: 17898..18167 (+)
• Length: 90 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
Tharo_RS00040	15237..15848	+	612	WP_107219444.1	hypothetical protein	-
Tharo_RS00045	15845..17035	+	1191	WP_107219445.1	DUF2157 domain-containing protein	-
Tharo_RS00050	17248..17490	+	243	WP_012584201.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
Tharo_RS00055	17487..17750	+	264	WP_107219446.1	Txe/YoeB family addiction module toxin	-
Tharo_RS00060	17898..18167	+	270	WP_107219447.1	ribbon-helix-helix domain-containing protein	Antitoxin
Tharo_RS00065	18167..18445	+	279	WP_107219448.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
Tharo_RS00070	18563..19396	-	834	WP_107219449.1	hypothetical protein	-
Tharo_RS00075	19411..20283	-	873	WP_107222251.1	hypothetical protein	-
Tharo_RS00090	20960..21424	+	465	WP_107219452.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-90)

Antitoxin

• Ribbon-helix-helix protein, CopG (9-46)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10786.63 Da
• Isoelectric Point: 10.6100

>T100987 WP_107219448.1 NZ_CP028339:18167-18445 [Thauera aromatica K172]
MELKWTSKALADLARLHEFLALVNRQAAAKTVQALTKAPIILLSNPRIGEQLFQFAPREVRRILVAQYEVRYEIRDSVIY
VLRLWHTREDRA

Nucleotide

• Length: 279 bp

>T100987 NZ_CP028339:18167-18445 [Thauera aromatica K172]
ATGGAGCTGAAATGGACCAGCAAGGCGCTTGCCGATCTGGCGCGCCTTCATGAGTTCCTGGCGCTGGTGAACAGGCAGGC
CGCTGCAAAGACGGTACAGGCGCTGACCAAGGCCCCGATCATCCTGCTGAGCAACCCGCGCATCGGCGAACAGCTTTTCC
AGTTCGCGCCGCGCGAGGTACGGCGGATCCTGGTCGCGCAGTACGAGGTGCGCTACGAGATCCGGGACTCGGTCATCTAC
GTCCTGCGGCTGTGGCACACCCGAGAGGACCGTGCCTGA

Antitoxin

Protein

• Length: 90 a.a.
• Molecular weight: 9841.26 Da
• Isoelectric Point: 4.7483

>AT100987 WP_107219447.1 NZ_CP028339:17898-18167 [Thauera aromatica K172]
MTQAATKVLTAHVPLPLAEKVDQMAARLERSRGWIMKQALSAWIAQEEERDRLTQEALADVDAGLVVDHLAVQTWADSLG
TDQPLPLPR

Nucleotide

• Length: 270 bp

>AT100987 NZ_CP028339:17898-18167 [Thauera aromatica K172]
ATGACGCAAGCCGCAACCAAAGTGCTCACCGCCCATGTGCCGCTCCCGCTCGCCGAGAAGGTCGATCAGATGGCCGCGAG
GCTGGAGCGCTCGCGCGGCTGGATCATGAAGCAAGCGCTCTCCGCCTGGATCGCCCAGGAGGAAGAGCGCGATCGCCTGA
CCCAGGAGGCGCTCGCCGATGTGGACGCCGGTCTCGTCGTCGACCATCTCGCGGTGCAGACCTGGGCCGACAGCCTGGGC
ACCGACCAGCCCCTGCCGCTGCCGCGCTGA