Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2906636..2906904 | Replicon | chromosome |
| Accession | NZ_CP028320 | ||
| Organism | Escherichia coli O18:H1 strain CFSAN067215 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2906674..2906776 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2906636..2906904 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7X15_RS14570 | 2903793..2905232 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C7X15_RS14575 | 2905350..2905586 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7X15_RS14580 | 2905691..2905882 | + | 192 | WP_001317886.1 | YebW family protein | - |
| C7X15_RS14585 | 2905883..2906539 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2906636..2906904 | + | 269 | - | - | Antitoxin |
| - | 2906674..2906776 | - | 103 | - | - | Toxin |
| C7X15_RS14590 | 2906934..2907275 | - | 342 | WP_000984819.1 | YebY family protein | - |
| C7X15_RS14595 | 2907288..2908160 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| C7X15_RS14600 | 2908164..2908538 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C7X15_RS14605 | 2908677..2908907 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7X15_RS14610 | 2909010..2909666 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| C7X15_RS14615 | 2909690..2910352 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T100967 NZ_CP028320:c2906776-2906674 [Escherichia coli O18:H1]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT100967 NZ_CP028320:2906636-2906904 [Escherichia coli O18:H1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
