Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4183564..4183709 | Replicon | chromosome |
| Accession | NZ_CP028176 | ||
| Organism | Klebsiella pneumoniae strain CFSAN054111 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4183600..4183702 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4183564..4183709 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9J89_RS20845 | 4178694..4180754 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C9J89_RS20850 | 4180758..4181417 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| C9J89_RS20855 | 4181496..4181726 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C9J89_RS20860 | 4181839..4182213 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C9J89_RS20865 | 4182217..4183086 | + | 870 | WP_107240810.1 | copper homeostasis membrane protein CopD | - |
| C9J89_RS20870 | 4183103..4183441 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4183564..4183709 | - | 146 | - | - | Antitoxin |
| - | 4183600..4183702 | + | 103 | - | - | Toxin |
| C9J89_RS28100 | 4184078..4184221 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C9J89_RS20880 | 4184326..4185294 | - | 969 | WP_199852543.1 | VirK/YbjX family protein | - |
| C9J89_RS20885 | 4185451..4186104 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C9J89_RS20890 | 4186101..4186292 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C9J89_RS20895 | 4186390..4186629 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C9J89_RS20900 | 4186745..4188178 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T100772 NZ_CP028176:4183600-4183702 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT100772 NZ_CP028176:c4183709-4183564 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
