Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1116929..1117200 | Replicon | chromosome |
| Accession | NZ_CP028166 | ||
| Organism | Escherichia coli strain CFSAN064036 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1116967..1117070 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1116929..1117200 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6668_RS06075 | 1114086..1115525 | + | 1440 | WP_107148153.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6668_RS06080 | 1115643..1115879 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| C6668_RS06085 | 1115984..1116175 | + | 192 | WP_001338167.1 | YebW family protein | - |
| C6668_RS06090 | 1116176..1116832 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 1116929..1117200 | + | 272 | - | - | Antitoxin |
| - | 1116967..1117070 | - | 104 | - | - | Toxin |
| C6668_RS06095 | 1117228..1117569 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C6668_RS06100 | 1117582..1118454 | - | 873 | WP_107147900.1 | copper homeostasis membrane protein CopD | - |
| C6668_RS06105 | 1118458..1118832 | - | 375 | WP_107147901.1 | CopC domain-containing protein YobA | - |
| C6668_RS06110 | 1118971..1119201 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6668_RS06115 | 1119303..1119959 | + | 657 | WP_107147902.1 | carbon-nitrogen hydrolase family protein | - |
| C6668_RS06120 | 1119983..1120645 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T100734 NZ_CP028166:c1117070-1116967 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT100734 NZ_CP028166:1116929-1117200 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
