Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 1167266..1167780 Replicon chromosome
Accession NZ_CP028163
Organism Staphylococcus aureus strain CFSAN064038

Toxin (Protein)


Gene name TsdT Uniprot ID T1YA99
Locus tag C9J77_RS05980 Protein ID WP_000581792.1
Coordinates 1167571..1167780 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID W8UW13
Locus tag C9J77_RS05975 Protein ID WP_000138932.1
Coordinates 1167266..1167559 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C9J77_RS05955 1163029..1164344 + 1316 Protein_1119 ISL3 family transposase -
C9J77_RS05960 1164341..1164661 - 321 WP_001825748.1 hypothetical protein -
C9J77_RS05965 1164941..1165588 - 648 WP_001187614.1 HD domain-containing protein -
C9J77_RS05970 1165616..1167100 - 1485 WP_000571550.1 cardiolipin synthase -
C9J77_RS05975 1167266..1167559 + 294 WP_000138932.1 copper-sensing transcriptional repressor CsoR Antitoxin
C9J77_RS05980 1167571..1167780 + 210 WP_000581792.1 heavy-metal-associated domain-containing protein Toxin
C9J77_RS05985 1167908..1168045 + 138 WP_000828354.1 hypothetical protein -
C9J77_RS05990 1168309..1169511 - 1203 WP_001109939.1 rod shape-determining protein RodA -
C9J77_RS05995 1169829..1170899 + 1071 WP_000159641.1 D-alanine--D-alanine ligase -
C9J77_RS06000 1170914..1172269 + 1356 WP_000611457.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Heavy metal-associated domain, HMA

(23-66)

Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7843.77 Da        Isoelectric Point: 4.1008

>T100709 WP_000581792.1 NZ_CP028163:1167571-1167780 [Staphylococcus aureus]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Download         Length: 210 bp

>T100709 NZ_CP028163:1167571-1167780 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATTGATGGTCAAGTAACGGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATTTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11197.82 Da        Isoelectric Point: 6.2243

>AT100709 WP_000138932.1 NZ_CP028163:1167266-1167559 [Staphylococcus aureus]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD

Download         Length: 294 bp

>AT100709 NZ_CP028163:1167266-1167559 [Staphylococcus aureus]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGAGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6FF1

Antitoxin

Source ID Structure
AlphaFold DB W8UW13

References