Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 41410..41963 Replicon chromosome
Accession NZ_CP028137
Organism Rathayibacter festucae DSM 15932

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C1I64_RS00190 Protein ID WP_127885846.1
Coordinates 41682..41963 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag C1I64_RS00185 Protein ID WP_127885845.1
Coordinates 41410..41685 (+) Length 92 a.a.

Genomic Context

C1I64_RS00175C1I64_RS00185C1I64_RS00190C1I64_RS00200C1I64_RS00205C1I64_RS00170C1I64_RS00180C1I64_RS00195C1I64_RS00210
Location: 38861..40204 (1344 bp)
Type: Others
Protein ID: WP_127885843.1
Location: 41410..41685 (276 bp)
Type: Antitoxin
Protein ID: WP_127885845.1
Location: 41682..41963 (282 bp)
Type: Toxin
Protein ID: WP_127885846.1
Location: 42776..44050 (1275 bp)
Type: Others
Protein ID: WP_127885848.1
Location: 44047..44955 (909 bp)
Type: Others
Protein ID: WP_127885849.1
Location: 37244..38755 (1512 bp)
Type: Others
Protein ID: WP_164874405.1
Location: 40508..41254 (747 bp)
Type: Others
Protein ID: WP_127885844.1
Location: 41975..42763 (789 bp)
Type: Others
Protein ID: WP_127885847.1
Location: 45358..46347 (990 bp)
Type: Others
Protein ID: WP_127885850.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
C1I64_RS0017037244..38755-1512WP_164874405.1PucR family transcriptional regulator ligand-binding domain-containing protein-
C1I64_RS0017538861..40204+1344WP_127885843.1aspartate aminotransferase family protein-
C1I64_RS0018040508..41254-747WP_127885844.1ZIP family zinc transporter-
C1I64_RS0018541410..41685+276WP_127885845.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
C1I64_RS0019041682..41963+282WP_127885846.1type II toxin-antitoxin system RelE/ParE family toxinToxin
C1I64_RS0019541975..42763-789WP_127885847.1endo alpha-1,4 polygalactosaminidase-
C1I64_RS0020042776..44050+1275WP_127885848.1VWA domain-containing protein-
C1I64_RS0020544047..44955+909WP_127885849.1FHA domain-containing protein-
C1I64_RS0021045358..46347-990WP_127885850.1serine/threonine protein kinase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(9-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10202.89 Da        Isoelectric Point: 9.7249

>T100675 WP_127885846.1 NZ_CP028137:41682-41963 [Rathayibacter festucae DSM 15932]
VSPEPPFEVRFTSPAVRALHRLPPKLAEAVLRFCAEPLAENPLRVTKPLSAELAGLRSGYVGVAYRVLVAIDEEARVVSV
LRIGHRADIYGTR

Download         Length: 282 bp

>T100675 NZ_CP028137:41682-41963 [Rathayibacter festucae DSM 15932]
GTGAGTCCGGAACCGCCCTTCGAGGTCCGGTTCACCAGTCCCGCCGTTCGAGCCCTGCACCGCCTGCCGCCGAAGCTGGC
CGAGGCGGTGCTCCGCTTCTGCGCCGAGCCCCTCGCCGAGAACCCCCTGCGCGTCACGAAGCCGCTGAGCGCGGAGCTCG
CGGGTCTGCGCTCCGGCTACGTCGGCGTGGCGTATCGCGTGCTGGTCGCCATCGACGAGGAGGCGCGAGTGGTGTCCGTC
CTGAGGATCGGGCATCGCGCCGACATCTACGGCACCCGCTAG

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 9645.70 Da        Isoelectric Point: 4.6216

>AT100675 WP_127885845.1 NZ_CP028137:41410-41685 [Rathayibacter festucae DSM 15932]
MQTLSVSEAKNHLSSLVDSVEATHDAVVITRHGKAAAVLISPDDLDSLTETIAWLSDPAHRGEIGEAESEVAAGRTLSLD
EVRAQLASRRA

Download         Length: 276 bp

>AT100675 NZ_CP028137:41410-41685 [Rathayibacter festucae DSM 15932]
ATGCAGACTCTCTCGGTCAGTGAAGCGAAGAACCACCTCTCGTCCCTCGTCGACTCGGTGGAGGCGACCCACGACGCCGT
CGTGATCACGCGCCACGGCAAGGCGGCGGCGGTCCTCATCTCGCCGGACGACCTCGACTCGCTGACCGAGACCATCGCCT
GGCTCTCCGATCCGGCGCACCGGGGAGAGATCGGCGAGGCGGAGTCGGAGGTCGCAGCGGGTCGAACGCTGAGCCTCGAC
GAGGTCCGCGCGCAGCTGGCGAGTCGACGGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References