Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2097951..2098222 | Replicon | chromosome |
| Accession | NZ_CP028122 | ||
| Organism | Escherichia coli O43 str. RM10042 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2097989..2098092 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2097951..2098222 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3W_RS12190 | 2095107..2096546 | + | 1440 | WP_024188711.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I3W_RS12195 | 2096665..2096901 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I3W_RS12200 | 2097006..2097197 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I3W_RS12205 | 2097198..2097854 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 2097951..2098222 | + | 272 | - | - | Antitoxin |
| - | 2097989..2098092 | - | 104 | - | - | Toxin |
| I3W_RS12210 | 2098250..2098591 | - | 342 | WP_000976472.1 | YebY family protein | - |
| I3W_RS12215 | 2098604..2099476 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| I3W_RS12220 | 2099480..2099854 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I3W_RS12225 | 2099993..2100223 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I3W_RS12230 | 2100325..2100981 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I3W_RS12235 | 2101005..2101667 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T100608 NZ_CP028122:c2098092-2097989 [Escherichia coli O43 str. RM10042]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT100608 NZ_CP028122:2097951-2098222 [Escherichia coli O43 str. RM10042]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
