Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 490154..490772 Replicon chromosome
Accession NZ_CP028122
Organism Escherichia coli O43 str. RM10042

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag I3W_RS03645 Protein ID WP_001291435.1
Coordinates 490154..490372 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag I3W_RS03650 Protein ID WP_000344800.1
Coordinates 490398..490772 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
I3W_RS03610 485443..486015 + 573 WP_000779826.1 lipoprotein -
I3W_RS03615 486046..486357 - 312 WP_000409911.1 MGMT family protein -
I3W_RS03625 486736..487089 + 354 WP_000878141.1 DUF1428 family protein -
I3W_RS03630 487131..488681 - 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
I3W_RS03635 488845..489315 - 471 WP_000136192.1 YlaC family protein -
I3W_RS03640 489431..489982 - 552 WP_000102564.1 maltose O-acetyltransferase -
I3W_RS03645 490154..490372 - 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
I3W_RS03650 490398..490772 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
I3W_RS03655 491318..494467 - 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
I3W_RS03660 494490..495683 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T100598 WP_001291435.1 NZ_CP028122:c490372-490154 [Escherichia coli O43 str. RM10042]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T100598 NZ_CP028122:c490372-490154 [Escherichia coli O43 str. RM10042]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT100598 WP_000344800.1 NZ_CP028122:c490772-490398 [Escherichia coli O43 str. RM10042]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT100598 NZ_CP028122:c490772-490398 [Escherichia coli O43 str. RM10042]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References