Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2255176..2255447 | Replicon | chromosome |
| Accession | NZ_CP028117 | ||
| Organism | Escherichia coli O111 str. RM9322 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2255214..2255317 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2255176..2255447 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3O_RS12130 | 2252333..2253772 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I3O_RS12135 | 2253890..2254126 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I3O_RS12140 | 2254231..2254422 | + | 192 | WP_001296140.1 | YebW family protein | - |
| I3O_RS12145 | 2254423..2255079 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2255176..2255447 | + | 272 | - | - | Antitoxin |
| - | 2255214..2255317 | - | 104 | - | - | Toxin |
| I3O_RS12150 | 2255475..2255816 | - | 342 | WP_000976492.1 | YebY family protein | - |
| I3O_RS12155 | 2255829..2256701 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| I3O_RS12160 | 2256705..2257079 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| I3O_RS12165 | 2257218..2257448 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I3O_RS12170 | 2257550..2258206 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I3O_RS12175 | 2258230..2258892 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T100568 NZ_CP028117:c2255317-2255214 [Escherichia coli O111 str. RM9322]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT100568 NZ_CP028117:2255176-2255447 [Escherichia coli O111 str. RM9322]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
