Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4584274..4584542 | Replicon | chromosome |
| Accession | NZ_CP028110 | ||
| Organism | Escherichia coli O121 str. RM8352 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4584401..4584504 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4584274..4584542 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3S_RS24185 | 4580827..4581489 | - | 663 | WP_000944246.1 | exodeoxyribonuclease X | - |
| I3S_RS24190 | 4581513..4582169 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| I3S_RS24195 | 4582271..4582501 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I3S_RS24200 | 4582640..4583014 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| I3S_RS24205 | 4583018..4583890 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| I3S_RS24210 | 4583903..4584244 | + | 342 | WP_000976478.1 | YebY family protein | - |
| - | 4584274..4584542 | - | 269 | - | - | Antitoxin |
| - | 4584401..4584504 | + | 104 | - | - | Toxin |
| I3S_RS24215 | 4584639..4585295 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| I3S_RS24220 | 4585296..4585487 | - | 192 | WP_001296140.1 | YebW family protein | - |
| I3S_RS24225 | 4585592..4585828 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| I3S_RS24230 | 4585946..4587385 | - | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T100477 NZ_CP028110:4584401-4584504 [Escherichia coli O121 str. RM8352]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT100477 NZ_CP028110:c4584542-4584274 [Escherichia coli O121 str. RM8352]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
