Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2814036..2814187 | Replicon | chromosome |
| Accession | NZ_CP027986 | ||
| Organism | Enterobacter sichuanensis strain SGAir0282 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2814049..2814152 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2814036..2814187 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1N69_RS13560 | 2810308..2811750 | + | 1443 | WP_155031369.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1N69_RS13565 | 2811856..2812095 | + | 240 | WP_008500472.1 | YebV family protein | - |
| C1N69_RS13570 | 2812130..2812774 | - | 645 | WP_155031370.1 | protein-serine/threonine phosphatase | - |
| C1N69_RS13575 | 2812942..2813883 | + | 942 | WP_155031371.1 | VirK/YbjX family protein | - |
| - | 2814036..2814187 | + | 152 | - | - | Antitoxin |
| - | 2814049..2814152 | - | 104 | - | - | Toxin |
| C1N69_RS13580 | 2814291..2814629 | - | 339 | WP_025756907.1 | YebY family protein | - |
| C1N69_RS13585 | 2814646..2815515 | - | 870 | WP_155031372.1 | copper homeostasis membrane protein CopD | - |
| C1N69_RS13590 | 2815517..2815888 | - | 372 | WP_155031373.1 | CopC domain-containing protein YobA | - |
| C1N69_RS13595 | 2816026..2816256 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| C1N69_RS13600 | 2816367..2817017 | + | 651 | WP_155031374.1 | carbon-nitrogen hydrolase family protein | - |
| C1N69_RS13605 | 2817042..2817704 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T100425 NZ_CP027986:c2814152-2814049 [Enterobacter sichuanensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT100425 NZ_CP027986:2814036-2814187 [Enterobacter sichuanensis]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
