Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 1538203..1538731 Replicon chromosome
Accession NZ_CP027752
Organism Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38

Toxin (Protein)


Gene name relE Uniprot ID A0A7S5LMJ4
Locus tag C4K05_RS07065 Protein ID WP_038581545.1
Coordinates 1538203..1538502 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A7S5HLJ1
Locus tag C4K05_RS07070 Protein ID WP_038581543.1
Coordinates 1538492..1538731 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C4K05_RS07045 1533997..1534779 - 783 WP_124355804.1 aldolase -
C4K05_RS07050 1534939..1535481 + 543 WP_007922237.1 XRE family transcriptional regulator -
C4K05_RS07055 1535804..1536823 - 1020 WP_009047445.1 DUF4917 family protein -
C4K05_RS07060 1536981..1538129 + 1149 WP_103331535.1 L-threonine dehydrogenase -
C4K05_RS07065 1538203..1538502 - 300 WP_038581545.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C4K05_RS07070 1538492..1538731 - 240 WP_038581543.1 ribbon-helix-helix protein, CopG family Antitoxin
C4K05_RS07075 1538868..1539284 + 417 WP_124355805.1 fosfomycin resistance glutathione transferase -
C4K05_RS07080 1539412..1540050 + 639 WP_016702101.1 LysE family translocator -
C4K05_RS07085 1540162..1541502 + 1341 WP_016702102.1 sensor domain-containing diguanylate cyclase -
C4K05_RS07090 1541641..1542165 + 525 WP_009047451.1 DUF4142 domain-containing protein -
C4K05_RS07095 1542259..1543149 - 891 WP_038630805.1 phosphotransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-82)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-41)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11487.13 Da        Isoelectric Point: 10.8916

>T100183 WP_038581545.1 NZ_CP027752:c1538502-1538203 [Pseudomonas chlororaphis subsp. aureofaciens]
MHVEWLRSALKNLDDEAAYIAQDSPQAAAEFVKAILSSIQHLSRFPASGREGRLPGTREWVVPNRPYLIPYRVRQGRLQI
LRIFHTRRLPPAGWQDDRQ

Download         Length: 300 bp

>T100183 NZ_CP027752:c1538502-1538203 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGCACGTTGAGTGGCTGCGCAGCGCCCTCAAGAACCTCGATGACGAAGCCGCCTACATTGCACAGGACAGTCCTCAGGC
CGCCGCGGAATTCGTCAAAGCCATCCTGAGTAGCATTCAACACCTGAGCCGTTTTCCTGCCAGTGGTCGCGAAGGTCGCC
TGCCCGGTACCCGGGAGTGGGTGGTCCCCAATCGTCCTTACCTGATCCCCTACCGCGTACGTCAGGGACGCCTGCAGATA
CTGCGGATTTTCCACACCCGGCGCTTGCCGCCTGCCGGTTGGCAAGACGACCGCCAATAG

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8648.73 Da        Isoelectric Point: 4.5535

>AT100183 WP_038581543.1 NZ_CP027752:c1538731-1538492 [Pseudomonas chlororaphis subsp. aureofaciens]
MSVMSLRLPDDVADTLAHLAKATGRSKSFLAVDALREYLAREAWQINEIQKALTEAEAGDFASAEELDGVLNKWTGNAR

Download         Length: 240 bp

>AT100183 NZ_CP027752:c1538731-1538492 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGTCCGTCATGTCCTTGCGCCTGCCCGATGATGTTGCCGATACCCTGGCTCACTTGGCCAAGGCGACAGGCCGCAGCAA
GTCATTCCTCGCTGTGGATGCACTGAGAGAATATCTGGCCCGCGAAGCCTGGCAAATCAACGAGATCCAGAAAGCCCTGA
CTGAAGCAGAGGCAGGCGACTTCGCCAGCGCCGAAGAGCTGGATGGCGTACTCAACAAATGGACTGGCAATGCACGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7S5LMJ4

Antitoxin

Source ID Structure
AlphaFold DB A0A7S5HLJ1

References