Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 1534132..1534660 | Replicon | chromosome |
Accession | NZ_CP027749 | ||
Organism | Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A7S5LMJ4 |
Locus tag | C4K08_RS06975 | Protein ID | WP_038581545.1 |
Coordinates | 1534132..1534431 (-) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A7S5HLJ1 |
Locus tag | C4K08_RS06980 | Protein ID | WP_038581543.1 |
Coordinates | 1534421..1534660 (-) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C4K08_RS06955 | 1529926..1530708 | - | 783 | WP_101281929.1 | aldolase | - |
C4K08_RS06960 | 1530868..1531410 | + | 543 | WP_007922237.1 | XRE family transcriptional regulator | - |
C4K08_RS06965 | 1531733..1532752 | - | 1020 | WP_009047445.1 | DUF4917 family protein | - |
C4K08_RS06970 | 1532910..1534058 | + | 1149 | WP_038630803.1 | L-threonine dehydrogenase | - |
C4K08_RS06975 | 1534132..1534431 | - | 300 | WP_038581545.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C4K08_RS06980 | 1534421..1534660 | - | 240 | WP_038581543.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
C4K08_RS06985 | 1534797..1535213 | + | 417 | WP_009047448.1 | fosfomycin resistance glutathione transferase | - |
C4K08_RS06990 | 1535341..1535979 | + | 639 | WP_016702101.1 | LysE family translocator | - |
C4K08_RS06995 | 1536091..1537431 | + | 1341 | WP_016702102.1 | sensor domain-containing diguanylate cyclase | - |
C4K08_RS07000 | 1537569..1538093 | + | 525 | WP_009047451.1 | DUF4142 domain-containing protein | - |
C4K08_RS07005 | 1538187..1539077 | - | 891 | WP_038630805.1 | phosphotransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11487.13 Da Isoelectric Point: 10.8916
>T100161 WP_038581545.1 NZ_CP027749:c1534431-1534132 [Pseudomonas chlororaphis subsp. aureofaciens]
MHVEWLRSALKNLDDEAAYIAQDSPQAAAEFVKAILSSIQHLSRFPASGREGRLPGTREWVVPNRPYLIPYRVRQGRLQI
LRIFHTRRLPPAGWQDDRQ
MHVEWLRSALKNLDDEAAYIAQDSPQAAAEFVKAILSSIQHLSRFPASGREGRLPGTREWVVPNRPYLIPYRVRQGRLQI
LRIFHTRRLPPAGWQDDRQ
Download Length: 300 bp
>T100161 NZ_CP027749:c1534431-1534132 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGCACGTTGAGTGGCTACGCAGCGCCCTCAAGAACCTCGATGACGAAGCCGCCTACATTGCACAGGACAGTCCTCAGGC
CGCCGCGGAATTCGTCAAAGCCATCCTGAGTAGCATTCAACACCTGAGCCGTTTTCCTGCCAGTGGTCGCGAAGGTCGCC
TGCCCGGTACCCGGGAGTGGGTGGTCCCCAATCGTCCTTACCTGATCCCCTACCGCGTACGTCAGGGACGCCTGCAGATA
CTGCGGATTTTCCACACCCGGCGCTTGCCGCCTGCCGGTTGGCAAGACGACCGCCAATAG
ATGCACGTTGAGTGGCTACGCAGCGCCCTCAAGAACCTCGATGACGAAGCCGCCTACATTGCACAGGACAGTCCTCAGGC
CGCCGCGGAATTCGTCAAAGCCATCCTGAGTAGCATTCAACACCTGAGCCGTTTTCCTGCCAGTGGTCGCGAAGGTCGCC
TGCCCGGTACCCGGGAGTGGGTGGTCCCCAATCGTCCTTACCTGATCCCCTACCGCGTACGTCAGGGACGCCTGCAGATA
CTGCGGATTTTCCACACCCGGCGCTTGCCGCCTGCCGGTTGGCAAGACGACCGCCAATAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 8648.73 Da Isoelectric Point: 4.5535
>AT100161 WP_038581543.1 NZ_CP027749:c1534660-1534421 [Pseudomonas chlororaphis subsp. aureofaciens]
MSVMSLRLPDDVADTLAHLAKATGRSKSFLAVDALREYLAREAWQINEIQKALTEAEAGDFASAEELDGVLNKWTGNAR
MSVMSLRLPDDVADTLAHLAKATGRSKSFLAVDALREYLAREAWQINEIQKALTEAEAGDFASAEELDGVLNKWTGNAR
Download Length: 240 bp
>AT100161 NZ_CP027749:c1534660-1534421 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGTCCGTCATGTCCTTGCGCCTGCCCGATGATGTTGCCGATACCCTGGCTCACTTGGCCAAGGCGACAGGCCGCAGCAA
GTCATTCCTCGCTGTGGATGCACTGAGAGAATATCTGGCCCGCGAAGCCTGGCAAATCAACGAGATCCAGAAAGCCCTGA
CTGAAGCAGAGGCAGGCGACTTCGCCAGCGCCGAAGAGCTGGATGGCGTACTCAACAAATGGACTGGCAATGCACGTTGA
ATGTCCGTCATGTCCTTGCGCCTGCCCGATGATGTTGCCGATACCCTGGCTCACTTGGCCAAGGCGACAGGCCGCAGCAA
GTCATTCCTCGCTGTGGATGCACTGAGAGAATATCTGGCCCGCGAAGCCTGGCAAATCAACGAGATCCAGAAAGCCCTGA
CTGAAGCAGAGGCAGGCGACTTCGCCAGCGCCGAAGAGCTGGATGGCGTACTCAACAAATGGACTGGCAATGCACGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7S5LMJ4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7S5HLJ1 |