Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | stbE-relB/ParE-YafN |
Location | 201537..202053 | Replicon | chromosome |
Accession | NZ_CP027749 | ||
Organism | Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39 |
Toxin (Protein)
Gene name | stbE | Uniprot ID | A0A8A9Z863 |
Locus tag | C4K08_RS00865 | Protein ID | WP_028681510.1 |
Coordinates | 201772..202053 (+) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A554PKE4 |
Locus tag | C4K08_RS00860 | Protein ID | WP_009046356.1 |
Coordinates | 201537..201782 (+) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C4K08_RS00835 | 197306..198301 | + | 996 | WP_041985268.1 | aspartyl beta-hydroxylase | - |
C4K08_RS00840 | 198267..199025 | - | 759 | WP_009046352.1 | slipin family protein | - |
C4K08_RS00845 | 199027..200412 | - | 1386 | WP_009046353.1 | nodulation protein NfeD | - |
C4K08_RS00850 | 200636..201097 | + | 462 | WP_016705004.1 | YbaK/EbsC family protein | - |
C4K08_RS00855 | 201228..201503 | + | 276 | WP_124312601.1 | DUF2789 domain-containing protein | - |
C4K08_RS00860 | 201537..201782 | + | 246 | WP_009046356.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
C4K08_RS00865 | 201772..202053 | + | 282 | WP_028681510.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C4K08_RS00870 | 202186..202614 | + | 429 | WP_009046358.1 | winged helix DNA-binding protein | - |
C4K08_RS00875 | 202611..204694 | + | 2084 | Protein_167 | FUSC family protein | - |
C4K08_RS00880 | 204691..204900 | + | 210 | WP_025808541.1 | DUF1656 domain-containing protein | - |
C4K08_RS00885 | 204897..205790 | + | 894 | WP_124310053.1 | HlyD family secretion protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10907.82 Da Isoelectric Point: 10.6258
>T100158 WP_028681510.1 NZ_CP027749:201772-202053 [Pseudomonas chlororaphis subsp. aureofaciens]
MTYKLQFLPSARKEWDKLGHTLREQFKRKLAERLEMPRVPADALHGMADCYKIKLKASGYRLVYQVIEDQVVVSVVAVGK
RERSAVYERARKR
MTYKLQFLPSARKEWDKLGHTLREQFKRKLAERLEMPRVPADALHGMADCYKIKLKASGYRLVYQVIEDQVVVSVVAVGK
RERSAVYERARKR
Download Length: 282 bp
>T100158 NZ_CP027749:201772-202053 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGACTTATAAGCTCCAGTTCCTGCCTTCGGCGCGCAAGGAATGGGACAAGCTCGGTCATACCCTGCGCGAGCAATTCAA
GAGGAAGCTGGCCGAGCGCCTGGAAATGCCGCGGGTGCCCGCGGACGCCCTTCACGGTATGGCGGACTGCTACAAGATCA
AGCTCAAGGCCTCTGGCTATCGCCTGGTTTACCAAGTGATCGAGGATCAGGTCGTGGTTTCGGTGGTGGCCGTGGGCAAA
CGTGAACGCAGTGCCGTGTATGAGCGGGCCCGAAAGCGCTGA
ATGACTTATAAGCTCCAGTTCCTGCCTTCGGCGCGCAAGGAATGGGACAAGCTCGGTCATACCCTGCGCGAGCAATTCAA
GAGGAAGCTGGCCGAGCGCCTGGAAATGCCGCGGGTGCCCGCGGACGCCCTTCACGGTATGGCGGACTGCTACAAGATCA
AGCTCAAGGCCTCTGGCTATCGCCTGGTTTACCAAGTGATCGAGGATCAGGTCGTGGTTTCGGTGGTGGCCGTGGGCAAA
CGTGAACGCAGTGCCGTGTATGAGCGGGCCCGAAAGCGCTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8814.14 Da Isoelectric Point: 4.7164
>AT100158 WP_009046356.1 NZ_CP027749:201537-201782 [Pseudomonas chlororaphis subsp. aureofaciens]
MQSVLADKAVSVSELKKNPSAVLNGAQGGAVAVLNHNRVMGYMVPADVFEAMMERLDDLELAEIVRARRHETPVPVNLDD
L
MQSVLADKAVSVSELKKNPSAVLNGAQGGAVAVLNHNRVMGYMVPADVFEAMMERLDDLELAEIVRARRHETPVPVNLDD
L
Download Length: 246 bp
>AT100158 NZ_CP027749:201537-201782 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGCAAAGCGTATTGGCTGATAAAGCTGTCAGCGTGTCTGAACTGAAAAAAAATCCTTCGGCTGTCCTGAACGGCGCACA
GGGTGGTGCGGTTGCGGTGCTCAATCACAACCGGGTCATGGGCTATATGGTCCCGGCCGACGTGTTTGAAGCCATGATGG
AGCGTCTTGACGATCTTGAACTGGCGGAGATTGTCCGTGCCCGTCGTCACGAGACCCCGGTCCCGGTAAATCTGGATGAC
TTATAA
ATGCAAAGCGTATTGGCTGATAAAGCTGTCAGCGTGTCTGAACTGAAAAAAAATCCTTCGGCTGTCCTGAACGGCGCACA
GGGTGGTGCGGTTGCGGTGCTCAATCACAACCGGGTCATGGGCTATATGGTCCCGGCCGACGTGTTTGAAGCCATGATGG
AGCGTCTTGACGATCTTGAACTGGCGGAGATTGTCCGTGCCCGTCGTCACGAGACCCCGGTCCCGGTAAATCTGGATGAC
TTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A8A9Z863 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A554PKE4 |