Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PanAT/- |
| Location | 29350..30754 | Replicon | chromosome |
| Accession | NZ_CP006764 | ||
| Organism | Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) | ||
Toxin (Protein)
| Gene name | panT | Uniprot ID | - |
| Locus tag | CDOO_RS11570 | Protein ID | WP_018022804.1 |
| Coordinates | 2363610..2364023 (-) | Length | 138 a.a. |
Antitoxin (Protein)
| Gene name | panA | Uniprot ID | A0A097IIB1 |
| Locus tag | CDOO_RS11575 | Protein ID | WP_018022803.1 |
| Coordinates | 2364023..2364589 (-) | Length | 189 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDOO_RS00125 (CDOO_00130) | 26533..28005 | - | 1473 | WP_018022352.1 | phytoene desaturase | - |
| CDOO_RS00130 (CDOO_00135) | 28002..28793 | - | 792 | WP_018022351.1 | phytoene/squalene synthase family protein | - |
| CDOO_RS00135 (CDOO_00140) | 28804..29076 | - | 273 | WP_018022350.1 | aldehyde dehydrogenase family protein | - |
| CDOO_RS00140 (CDOO_00145) | 29236..30273 | + | 1038 | WP_018022349.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| CDOO_RS00145 (CDOO_00150) | 30396..31316 | + | 921 | WP_155861363.1 | iron ABC transporter permease | - |
| CDOO_RS00150 (CDOO_00155) | 31376..32320 | + | 945 | WP_081610373.1 | iron ABC transporter permease | - |
| CDOO_RS00155 (CDOO_00160) | 32317..33123 | + | 807 | WP_018022346.1 | ABC transporter ATP-binding protein | - |
| CDOO_RS00160 (CDOO_00165) | 33123..34028 | + | 906 | WP_018022345.1 | siderophore-interacting protein | - |
| CDOO_RS00165 (CDOO_00170) | 34025..34879 | - | 855 | WP_018022344.1 | hypothetical protein | - |
| CDOO_RS00170 (CDOO_00175) | 35019..35540 | + | 522 | WP_018022343.1 | peptidylprolyl isomerase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 14944.07 Da Isoelectric Point: 4.5967
>T10015 WP_018022804.1 NZ_CP006764:c2364023-2363610 [Corynebacterium doosanense CAU 212 = DSM 45436]
MDREQVMVSLLVREALEINRGCASRDEPFAGFGLRDEAALRSAIGAVFQSVIGQPAYPDVYSRGAALLIKVAKAHAFVDG
NKRTAFLLCVTYLGIGEISISPQCPQEAIDFVERVTKSDEDQGDLIRIAASQLLEWS
MDREQVMVSLLVREALEINRGCASRDEPFAGFGLRDEAALRSAIGAVFQSVIGQPAYPDVYSRGAALLIKVAKAHAFVDG
NKRTAFLLCVTYLGIGEISISPQCPQEAIDFVERVTKSDEDQGDLIRIAASQLLEWS
Download Length: 414 bp
>T10015 NZ_CP006764:c2364023-2363610 [Corynebacterium doosanense CAU 212 = DSM 45436]
ATGGACCGGGAACAGGTCATGGTGTCTCTTTTGGTGCGGGAGGCACTCGAGATAAACCGGGGTTGCGCGTCGCGGGATGA
ACCCTTCGCTGGGTTCGGTTTGCGTGACGAAGCAGCGCTCCGAAGCGCAATTGGGGCGGTATTCCAATCTGTCATCGGAC
AGCCTGCCTACCCGGACGTCTACAGCCGTGGAGCTGCCCTGCTCATTAAAGTTGCCAAGGCGCACGCGTTCGTCGACGGA
AACAAAAGGACGGCCTTCCTGCTCTGCGTGACGTACCTCGGTATTGGGGAAATAAGCATTAGCCCGCAATGCCCTCAGGA
GGCGATTGATTTCGTCGAGAGAGTTACAAAGTCCGACGAGGACCAGGGAGATCTCATCCGAATCGCAGCGAGCCAACTTC
TGGAATGGAGTTAG
ATGGACCGGGAACAGGTCATGGTGTCTCTTTTGGTGCGGGAGGCACTCGAGATAAACCGGGGTTGCGCGTCGCGGGATGA
ACCCTTCGCTGGGTTCGGTTTGCGTGACGAAGCAGCGCTCCGAAGCGCAATTGGGGCGGTATTCCAATCTGTCATCGGAC
AGCCTGCCTACCCGGACGTCTACAGCCGTGGAGCTGCCCTGCTCATTAAAGTTGCCAAGGCGCACGCGTTCGTCGACGGA
AACAAAAGGACGGCCTTCCTGCTCTGCGTGACGTACCTCGGTATTGGGGAAATAAGCATTAGCCCGCAATGCCCTCAGGA
GGCGATTGATTTCGTCGAGAGAGTTACAAAGTCCGACGAGGACCAGGGAGATCTCATCCGAATCGCAGCGAGCCAACTTC
TGGAATGGAGTTAG
Antitoxin
Download Length: 189 a.a. Molecular weight: 21000.57 Da Isoelectric Point: 4.8708
>AT10015 WP_018022803.1 NZ_CP006764:c2364589-2364023 [Corynebacterium doosanense CAU 212 = DSM 45436]
MATIFDVAQSIVQLRPGLTKIELYKLCYFAQGWHSTWVGQPLFTQPMEAWKYGPVSPELRQHSRSTGNRIDSIDTGSSDN
LGDYERELIANVVEFYEGVAAFGADGLSDQSHGPAWQNARGDLPPEAACSVVIQQTDIRKEFTQRMWGEDPKPDAPATLP
PFSADELSRVRRQAEITHREVLRGLALI
MATIFDVAQSIVQLRPGLTKIELYKLCYFAQGWHSTWVGQPLFTQPMEAWKYGPVSPELRQHSRSTGNRIDSIDTGSSDN
LGDYERELIANVVEFYEGVAAFGADGLSDQSHGPAWQNARGDLPPEAACSVVIQQTDIRKEFTQRMWGEDPKPDAPATLP
PFSADELSRVRRQAEITHREVLRGLALI
Download Length: 567 bp
>AT10015 NZ_CP006764:c2364589-2364023 [Corynebacterium doosanense CAU 212 = DSM 45436]
ATGGCAACCATTTTCGATGTCGCTCAGAGCATCGTCCAGCTTCGGCCTGGGCTGACCAAAATCGAACTTTACAAGCTCTG
CTACTTCGCCCAAGGTTGGCATTCCACGTGGGTTGGCCAGCCGCTGTTCACGCAACCCATGGAAGCGTGGAAGTACGGCC
CGGTAAGTCCGGAATTGCGCCAGCACAGTCGCTCGACCGGCAATCGCATCGACTCCATCGACACTGGAAGCTCGGACAAC
CTTGGCGATTATGAGCGTGAGCTTATCGCGAACGTTGTTGAATTCTATGAGGGTGTGGCAGCTTTCGGGGCAGACGGGTT
GTCCGATCAAAGCCACGGTCCTGCATGGCAAAACGCGCGCGGAGATCTTCCGCCCGAGGCGGCCTGCTCGGTGGTCATTC
AGCAGACCGATATCCGCAAGGAATTTACCCAGCGGATGTGGGGTGAAGATCCCAAGCCGGATGCCCCTGCGACTCTGCCC
CCGTTTAGTGCTGATGAACTTTCCCGAGTCCGTCGACAGGCGGAGATCACGCACCGTGAGGTACTGCGAGGCCTTGCGCT
CATCTGA
ATGGCAACCATTTTCGATGTCGCTCAGAGCATCGTCCAGCTTCGGCCTGGGCTGACCAAAATCGAACTTTACAAGCTCTG
CTACTTCGCCCAAGGTTGGCATTCCACGTGGGTTGGCCAGCCGCTGTTCACGCAACCCATGGAAGCGTGGAAGTACGGCC
CGGTAAGTCCGGAATTGCGCCAGCACAGTCGCTCGACCGGCAATCGCATCGACTCCATCGACACTGGAAGCTCGGACAAC
CTTGGCGATTATGAGCGTGAGCTTATCGCGAACGTTGTTGAATTCTATGAGGGTGTGGCAGCTTTCGGGGCAGACGGGTT
GTCCGATCAAAGCCACGGTCCTGCATGGCAAAACGCGCGCGGAGATCTTCCGCCCGAGGCGGCCTGCTCGGTGGTCATTC
AGCAGACCGATATCCGCAAGGAATTTACCCAGCGGATGTGGGGTGAAGATCCCAAGCCGGATGCCCCTGCGACTCTGCCC
CCGTTTAGTGCTGATGAACTTTCCCGAGTCCGTCGACAGGCGGAGATCACGCACCGTGAGGTACTGCGAGGCCTTGCGCT
CATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
References
(1) Tatsuaki Kurata et al. (2022) A hyperpromiscuous antitoxin protein domain for the neutralization of diverse toxin domains. Proceedings of The National Academy of Sciences of The United States of America 119(6):e2102212119. [PubMed:35121656]