Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PanAT/- |
| Location | 5243135..5244123 | Replicon | chromosome |
| Accession | LT629788 | ||
| Organism | Pseudomonas moraviensis strain BS3668 | ||
Toxin (Protein)
| Gene name | panT | Uniprot ID | - |
| Locus tag | SAMN04490196_4922 | Protein ID | SDU72800.1 |
| Coordinates | 5243135..5243533 (-) | Length | 133 a.a. |
Antitoxin (Protein)
| Gene name | panA | Uniprot ID | - |
| Locus tag | SAMN04490196_4923 | Protein ID | SDU72805.1 |
| Coordinates | 5243533..5244123 (-) | Length | 197 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAMN04490196_4918 | 5238314..5238928 | - | 615 | SDU72782.1 | Glutathione S-transferase | - |
| SAMN04490196_4919 | 5238925..5240706 | - | 1782 | SDU72786.1 | FAD-NAD(P)-binding | - |
| SAMN04490196_4920 | 5240700..5241731 | - | 1032 | SDU72790.1 | ornithine cyclodeaminase | - |
| SAMN04490196_4921 | 5241737..5242711 | - | 975 | SDU72795.1 | cysteine synthase A | - |
| SAMN04490196_4922 | 5243135..5243533 | - | 399 | SDU72800.1 | hypothetical protein | Toxin |
| SAMN04490196_4923 | 5243533..5244123 | - | 591 | SDU72805.1 | Uncharacterized phage-associated protein | Antitoxin |
| SAMN04490196_4925 | 5244574..5244846 | - | 273 | SDU72810.1 | Fe-S cluster biosynthesis and repair protein YggX | - |
| SAMN04490196_4926 | 5244843..5245910 | - | 1068 | SDU72815.1 | A/G-specific DNA-adenine glycosylase | - |
| SAMN04490196_4927 | 5245907..5248123 | - | 2217 | SDU72820.1 | AsmA protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 133 a.a. Molecular weight: 14890.05 Da Isoelectric Point: 7.5462
>T10012 SDU72800.1 LT629788:c5243533-5243135 [Pseudomonas moraviensis]
MPGNILRKGTLLILSGPANHLHIVMNDPVYSHEHGYEGVLAVNISSIKAGIYHDPSCILTTECHPYVRWDSWVVYKEAAV
FDASRLDMKVDAGEIVAHHPVSDGLYERIRAGFDVSRHLPRKIGRFIRQNNF
MPGNILRKGTLLILSGPANHLHIVMNDPVYSHEHGYEGVLAVNISSIKAGIYHDPSCILTTECHPYVRWDSWVVYKEAAV
FDASRLDMKVDAGEIVAHHPVSDGLYERIRAGFDVSRHLPRKIGRFIRQNNF
Download Length: 399 bp
>T10012 LT629788:c5243533-5243135 [Pseudomonas moraviensis]
ATGCCAGGGAATATTTTAAGGAAAGGAACTCTACTGATACTCAGCGGCCCGGCCAACCATCTCCATATCGTGATGAATGA
CCCTGTTTATTCACATGAACATGGGTACGAAGGTGTTTTGGCTGTAAACATTTCCTCAATCAAGGCGGGGATTTACCATG
ATCCTTCATGCATTTTGACTACGGAATGTCATCCTTATGTACGTTGGGATAGCTGGGTGGTGTACAAAGAAGCTGCTGTC
TTTGACGCATCTCGGCTTGATATGAAAGTGGACGCCGGGGAAATCGTAGCTCATCACCCTGTGAGTGATGGCTTGTATGA
ACGAATTCGAGCTGGTTTCGATGTCTCCAGACATCTTCCAAGGAAGATCGGCAGATTTATCCGTCAGAATAATTTCTAA
ATGCCAGGGAATATTTTAAGGAAAGGAACTCTACTGATACTCAGCGGCCCGGCCAACCATCTCCATATCGTGATGAATGA
CCCTGTTTATTCACATGAACATGGGTACGAAGGTGTTTTGGCTGTAAACATTTCCTCAATCAAGGCGGGGATTTACCATG
ATCCTTCATGCATTTTGACTACGGAATGTCATCCTTATGTACGTTGGGATAGCTGGGTGGTGTACAAAGAAGCTGCTGTC
TTTGACGCATCTCGGCTTGATATGAAAGTGGACGCCGGGGAAATCGTAGCTCATCACCCTGTGAGTGATGGCTTGTATGA
ACGAATTCGAGCTGGTTTCGATGTCTCCAGACATCTTCCAAGGAAGATCGGCAGATTTATCCGTCAGAATAATTTCTAA
Antitoxin
Download Length: 197 a.a. Molecular weight: 22445.56 Da Isoelectric Point: 5.1118
>AT10012 SDU72805.1 LT629788:c5244123-5243533 [Pseudomonas moraviensis]
MSLWIGERGLIVIFSEQKVAQMAAYFLQRRGGRMAYIKLMKLLYLADRESMDRYSAPISHDSHVSMAQGPVLSATLNLIT
GQIQSPIWRSWITSEAQFEVSLSRGPTDIEELDELSDADIEILDHVWDQFGRMKRWELVDYTHDHLPEWIDPGRSSTPIN
PRAVFRALGKDENQAEALARELFERKSLGRAVSELI
MSLWIGERGLIVIFSEQKVAQMAAYFLQRRGGRMAYIKLMKLLYLADRESMDRYSAPISHDSHVSMAQGPVLSATLNLIT
GQIQSPIWRSWITSEAQFEVSLSRGPTDIEELDELSDADIEILDHVWDQFGRMKRWELVDYTHDHLPEWIDPGRSSTPIN
PRAVFRALGKDENQAEALARELFERKSLGRAVSELI
Download Length: 591 bp
>AT10012 LT629788:c5244123-5243533 [Pseudomonas moraviensis]
ATGTCCCTATGGATTGGGGAAAGGGGTTTAATTGTGATCTTCAGCGAACAAAAAGTAGCCCAGATGGCGGCTTACTTTTT
GCAAAGACGCGGCGGACGCATGGCCTACATAAAACTCATGAAGCTGCTGTACCTAGCGGATCGTGAGTCGATGGATCGCT
ATAGCGCCCCCATTTCGCACGATTCGCATGTCTCAATGGCGCAGGGACCTGTCCTCTCTGCAACGCTTAATCTCATCACT
GGACAAATTCAGTCGCCTATCTGGCGAAGCTGGATAACCTCCGAAGCGCAATTCGAAGTCTCTCTCAGCCGCGGCCCCAC
TGACATTGAGGAACTGGACGAGTTGTCCGATGCAGACATTGAGATCTTGGATCATGTCTGGGATCAGTTTGGGCGAATGA
AGCGCTGGGAGCTTGTGGATTACACTCATGACCACCTGCCGGAATGGATCGACCCAGGGCGTTCCTCTACTCCCATCAAT
CCTCGAGCAGTGTTCAGGGCGCTAGGCAAGGACGAGAATCAGGCAGAAGCGCTGGCTCGAGAATTGTTTGAGCGTAAAAG
TCTAGGAAGGGCGGTTTCTGAGTTGATCTGA
ATGTCCCTATGGATTGGGGAAAGGGGTTTAATTGTGATCTTCAGCGAACAAAAAGTAGCCCAGATGGCGGCTTACTTTTT
GCAAAGACGCGGCGGACGCATGGCCTACATAAAACTCATGAAGCTGCTGTACCTAGCGGATCGTGAGTCGATGGATCGCT
ATAGCGCCCCCATTTCGCACGATTCGCATGTCTCAATGGCGCAGGGACCTGTCCTCTCTGCAACGCTTAATCTCATCACT
GGACAAATTCAGTCGCCTATCTGGCGAAGCTGGATAACCTCCGAAGCGCAATTCGAAGTCTCTCTCAGCCGCGGCCCCAC
TGACATTGAGGAACTGGACGAGTTGTCCGATGCAGACATTGAGATCTTGGATCATGTCTGGGATCAGTTTGGGCGAATGA
AGCGCTGGGAGCTTGTGGATTACACTCATGACCACCTGCCGGAATGGATCGACCCAGGGCGTTCCTCTACTCCCATCAAT
CCTCGAGCAGTGTTCAGGGCGCTAGGCAAGGACGAGAATCAGGCAGAAGCGCTGGCTCGAGAATTGTTTGAGCGTAAAAG
TCTAGGAAGGGCGGTTTCTGAGTTGATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|
References
(1) Tatsuaki Kurata et al. (2022) A hyperpromiscuous antitoxin protein domain for the neutralization of diverse toxin domains. Proceedings of The National Academy of Sciences of The United States of America 119(6):e2102212119. [PubMed:35121656]